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11-0277-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8210483 [Map]; Strand: w
      • AT2G18950.1 - [+] show detail - homogentisate phytyltransferase 1
        Distance: 20; Region: intergenic
      • AT2G18960.1 - [+] show detail - H(+)-ATPase 1
        Distance: -11148; Region: intergenic
    Flanking Genome Sequence: 11-0277-1 - 3-prime edge
    CTTGTGAGCT TCGACGTTAG GTCTGAATTA TCCATATATA TAAACATATA 
    CTTTCGAACT CATGCTTTCT AACAAAAATC CATACGTTCT GCAAATTACA
    TCAACAAAAA AATGTAGTCA CGTACATATA CATATCTTAA CTACACAGAG
    ATAAAGAGTT TAGGTGATAA AAACAGAGCT TTCTTGCAGA AGAAGATATA
    GAATGGAGAT GTTCTGACAT GTTTACACAT AGTTTCGGAA ATTTCTACAT
    AGAATCGATT TCTTCGCTTA GCATTATATC AACACACCGA ACCTTAAGAT
    TTTGCCCAAG CAGAGACTTC TTTACCCAAC AGAAATTCAT ATCTTTGACA
    TATTTTTGCA GTCTGCCATG TTTCAGAATA AAACTCTAAT TCACTAGTTC
    ACTACCTAAT TTCATGAACT TGTAATAAAA ACAGAAGCAT AGTGATGACT
    TATTCTTTTA TCTCCATCTT CTTCTCTTCT AATGTCAGTC ACTTCAAAAA
    AGGTAACAGC AAGTACTCTG CATAAAAGAG CTGATGCAGA AATGAGAATT
    TATCAGTATA TGGTGATTCG ATGAAACTGA ANGCTTTTTA ATTCCAAATT
    GCCANCNCAG NNNAAGGCAN NAAAGACTCN NTTTTATAAA CGAATNTAAC
    CNTCCATNTG AACNTNTACC NNGAAGTNTT NNCGGNTNNG NTACGNAAAT
    NAANGGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8210599 [Map]; Strand: w
      • AT2G18950.1 - [+] show detail - homogentisate phytyltransferase 1
        Distance: 136; Region: intergenic
      • AT2G18960.1 - [+] show detail - H(+)-ATPase 1
        Distance: -11032; Region: intergenic
    Flanking Genome Sequence: 11-0277-1 - 5-prime edge
    CTCACAAGCA TAAATTCACT ACTATAGTTT GCTCTGTAAT AGATAGTTCC 
    ATTGATGTCT TGAAACTGTA CAGTAACTGC CTGGGCAGTT TTGTGGTTGA
    TACTGACTAC TGAGTGTTCT TTGTGAGTGT TGTAAGTATA CAAGAAGAAG
    AATATAGGCT CACGGGAACG ACTGTGGTGG AAGATGAAAT GGAGATCATC
    ACGTAGCGGC TTTGCCAAAG ACCGAGTCAC GATCGAGTCT ATGAAGTCTT
    TACAGCTGCT GATTATGATT GACCATTGCT TAGAGACGCA TTGGAATCTT
    ACTAGGGACT TGCCTGGGAG TTTCTTCAAG TACGTGTCAG ATCATACGAT
    GTAGGAGATT TCACGGCTTT GATGTGTTTG TTTGGAGTCA CAATGCTTAA
    TGGGCTTATT GGCCCAATAA TAGCTAGCTC TTTTGCTTTA GCCGTTTCGT
    TTGTCCCCTG GTGGTGAGTA TTATTAGGGT ATGGTGTGAC CAAAGTCACC
    AGACCTAGAG TGAATCTAGT AGAGTCCTAN ACCATGGTCC ATGGCTTTTA
    TTTGTAATTT NGAAAAAATG AACAATTCTT TTTGNNAAGG AAAACTTTTN
    TATNNTAGAC CGTTTACTAT ATANAAAACT AGTNGAAACT AANTTNNNGC
    ANTTGCATAN TAAATGGNGG GAAATANAGG GTGCAAAACT CAATAA

AT2G18950.1

Model type
Protein coding
Short Description
homogentisate phytyltransferase 1
Curator Summary
Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.
Computational Description
homogentisate phytyltransferase 1 (HPT1); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate prenyltransferase (TAIR:AT3G11945.1); Has 1047 Blast hits to 1044 proteins in 315 species: Archae - 194; Bacteria - 477; Metazoa - 7; Fungi - 6; Plants - 190; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G18960.1

Model type
Protein coding
Short Description
H(+)-ATPase 1
Curator Summary
Encodes a plasma membrane proton ATPase. Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA.
Computational Description
H(+)-ATPase 1 (HA1); FUNCTIONS IN: protein binding, ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: response to water deprivation, proton transport, response to abscisic acid stimulus, regulation of stomatal movement; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 2 (TAIR:AT4G30190.1); Has 37421 Blast hits to 33000 proteins in 3185 species: Archae - 713; Bacteria - 23967; Metazoa - 3870; Fungi - 2594; Plants - 1874; Viruses - 3; Other Eukaryotes - 4400 (source: NCBI BLink).
Link
InterPro Scan - TAIR