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11-0280-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20727253 [Map]; Strand: c
      • AT3G55850.2 - [+] show detail - Amidohydrolase family
        Distance: -1360; Region: intergenic
      • AT3G55860.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 338; Region: intergenic
    Flanking Genome Sequence: 11-0280-1 - 5-prime edge 
    CNNNTNAAAA ACAAACAAAA TCGGTTATNC GATAACGGTC GGTACGGGAT 
    TTTNNNANNA NANTTNAATC CNNGNTNAAG ACCACGCGNG CNACTATAAN 
    GAGTCCNTTA CCGGGCNAGA NANCANGCCC NGACNGACAA CNACNGCTNN 
    CCNNNNCNTG GNNNNATTAN CNCGNNNNAN AAGANGGTNC CGTNNAATCA 
    TAAAACTCTT TAAAATTTCT GAATTTTTAA AGGTGTACGT AAAATATTTT 
    GGTGTACATA CTGTATACCA ATCAGATTTT ACATTTCTGA TATCTATTAA 
    GTGTACATAC ACGTATGTAG TCTAGTCTAC TGTATATGGT GTACTAATGT 
    TGGTATACGT ATGTGGTGTA CTAATGTTGG TGTACGTNTG TGGTGTACTT 
    ATGTTAGTCT AGACACTTGA GATGTACTAG CTCTGGTGTA CGTATGTTGN 
    TTCCCTTATT CTATTGTACN TATGAGGTGT ACTAACGCAT GTGTNCTTGT 
    GTGGTGTACT ATTGCTGGTT TACGTNTGTG GTGTANATAT TTTAGTTTTG 
    AACATTTTTN CATTTTTTAA ATGGGTTTTN CTNNNGAGTT TAAATNTTCT 
    ATCTTGGCTT TGGAGTGTAA TTNAAAATCT NANGGNNTTT TNAAATNGAT 
    TTANTTCGGG GNNNCNTTCG TGTNTCTATC NTCTAGGAAT CGTNNTANAC 
    CTCNATGNGN CNAGANATNT ATGTTGGTTG AAGGANAGNN TCAAACTTNC 
    NTGNTTTTTT TATTGGGTCC NTTNATGAGC ATTNTNAGNN CAANAAAAAA 
    AGAANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 603208 [Map]; Strand: c
      • AT2G02280.1 - [+] show detail - phloem protein 2-B4
        Distance: -1769; Region: intergenic
      • AT2G02290.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: -1245; Region: intergenic
    Flanking Genome Sequence: 11-0280-1 - 3-prime edge 
    CCCATGAGCA ATTCGAAATT GGAGATGTTA TTGGGCTGGT TTTAATGAGG 
    CCCAGTTTAT TTCATCAAAC CAACAAAAGG GTAAAATTGT ATTTTACTAA 
    AAGCTGTATT AGTGGGGGAG TTCTATTAGA GAGGAGAGAT AAAAGTGCCT 
    ATTCCACCTA TTTCTAAAAA AAATACCCAT TTCTCAAATT ATTTTTGCAA 
    AAACTGTCTA CTCTCCAACT TATCTCTATT ATGTACAACT TCGTTTAACA 
    TAACNTGTTG CATGCTCTGA GGGAAATCGG ACTATAACGT CTTCTTTCCA 
    AAATTGTATT CTTGGATCTT CTCAAGAGTG AACCGCCACC AATGTCGTAT 
    CAATTAGAGG CCTTCTCAAG AGTGAACCAC CACCAATGCA GGATTGGGTA 
    ACCAAAAGCT AAATACTAAC AAGTCACAAC ATGTGACAGC CCTTANAATC 
    TTATTATATA ATGTGGTTTC GGGCTTGAGG GATTANAGGT ATTCTCTATG 
    GTCTTAGCAN AAATCTTACA TGAAGACGCT AAACCCAACA TCAAGTTCGC 
    CTTCAAGCTG ATCCATTTCT CATCCAAAAT CTTTCGTTCG CTTAAATACG 
    TAACTTTTCA AAGATCCTTC ACCTCCCCAA CACACAGATA TGTCTCTAAA 
    ACCTGTGGAC AATTTAAAAA ATGTCACTTG TGGTGGAATA CGCANAGGCT 
    TCAAACCAAA CCTGCAGCTT ATAAACCAAA ACATGCAATT TCTCAAACCA 
    N

AT2G02280.1

Model type
Protein coding
Short Description
phloem protein 2-B4
Computational Description
phloem protein 2-B4 (PP2-B4); BEST Arabidopsis thaliana protein match is: phloem protein 2-B10 (TAIR:AT2G02360.1); Has 181 Blast hits to 181 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02290.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G23470.1); Has 856 Blast hits to 853 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 147; Plants - 288; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55850.2

Model type
Protein coding
Short Description
Amidohydrolase family
Curator Summary
Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.
Computational Description
LONG AFTER FAR-RED 3 (LAF3); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55860.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR