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11-0287-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 870163 [Map]; Strand: c
      • AT2G02980.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0287-1 - 5-prime edge 
    AAACCTTTGA ACATCTCTAA GAACAACTTT CCTACCAAAT ATAAGAGATA 
    TCAACTTTGC TGCATTGTGA CAATCTCTAC ACACCCTAAG ATTCTTCACA 
    ACCCGAATCG TTGTTCCCGG AGGAGTATTC AATAATCCAA ACGTTATCGC 
    AAGCT

AT2G02980.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 85 (OTP85); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 39959 Blast hits to 14548 proteins in 281 species: Archae - 3; Bacteria - 7; Metazoa - 132; Fungi - 233; Plants - 38891; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).
Link
InterPro Scan - TAIR