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11-0294-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15620690 [Map]; Strand: c
      • AT4G32350.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon6 (3UTR)
      • AT4G32360.1 - [+] show detail - Pyridine nucleotide-disulphide oxidoreductase family protein
        Distance: -611; Region: promoter
    Flanking Genome Sequence: 11-0294-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCACT GATTTAATCT CATTAATTCT ATCTTTCTAG 
    GCATCAACTG TTCATATATT TACCTTCCTT TTAGCTCTGC AAATCTGGCA 
    GCCAAATCGT CATAGTTTGG TAACTTGGGG TGAACGTGCN TTAGCTTCAC 
    NTGGAACNGT TCTGGCTGAA ACGAGGCTGC ACGGGCAAAT GTTTTTGCAG 
    GTTCAGATGG CCCGGCCAAC TGTTCAGCGG GTAGAGACCG TGACCGAGCC 
    GGCTGATGAA TCATCATCTC TTCATCAGAT TCACCTTTTT TAAGATGGGT 
    ACGTCTGCTT TTGGATTCTT CTTGCACATT GTCCTTTTCA TAACTTGAAG 
    GTTTTTTACT GTAATGCATC AGAAGTTTAT CCATCATCTT CTCCTCACTG 
    TCTTTCTCAT CCTCGTCAAT TAAGACTTGA AGGCCTTTCC TTGAGTTTTC 
    CCTTCTTCGG CTACTTATGT GATCATCACC TCCCGATTCT ACAATGTGCT 
    TTCTTCTGTT AGTTCGCCGT TTCAGAGATG CATTGTCTAT GTCATTCACT 
    TCATGATGAC CTGCTCCATT TCGTCTCTCT GCCCCATAAA CATTTTTACC 
    ATTGTCTGGA TGATTTCCTT CTTCACCATC AAAACGAGCC TTTGGATTAT 
    CTAAAGCT

AT4G32350.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G79910.1); Has 2836 Blast hits to 2289 proteins in 246 species: Archae - 0; Bacteria - 95; Metazoa - 1034; Fungi - 145; Plants - 397; Viruses - 5; Other Eukaryotes - 1160 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G32360.1

Model type
Protein coding
Short Description
Pyridine nucleotide-disulphide oxidoreductase family protein
Computational Description
Pyridine nucleotide-disulphide oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Adrenodoxin reductase (InterPro:IPR000759), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NADH-dependent glutamate synthase 1 (TAIR:AT5G53460.3); Has 9342 Blast hits to 9327 proteins in 2028 species: Archae - 136; Bacteria - 6683; Metazoa - 218; Fungi - 274; Plants - 105; Viruses - 0; Other Eukaryotes - 1926 (source: NCBI BLink).
Link
InterPro Scan - TAIR