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11-0295-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6777 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon13 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon12 (CDS)
    Flanking Genome Sequence: 11-0295-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TGGGGTATAT TCGTTTGATG CCAGCTAGCG 
    TTTTAGGCAC TGGACCCCCA TTGCACTTGA TACAATTTAA AGCCAGAGGG 
    ACACCAATTT CTTTACCTTG AGGAAGGAAG AGATTATAAA CGATCAATGG 
    AAAGATAACA ATATGAAAGC AATAAGAACT CAGATGATGT AGTGAGGCCC 
    ACAGCATAAA GCTACTTACA GAAGCCTAGT CGGTCCGCCC AGTGAGCTCT 
    GTATGTCCCA TTAATATTCA ACAACAAACA GATTGTACTT GAAATCACTG 
    CCTGAAAGTT TGGTTGAATG AAACTCTTAT GAACAAACCA ACCTGAGAAG 
    ATATCAGAAA ATCTTATAAA ATGCAAAGTC TAGGAAACCT CAAGTGGTGA 
    TGTTGGGGTA GCCCAGCCAG AAAGTCCTGC CCCGAGGATC TTCAGATAAG 
    AGATAAGAAC GTAAGCATGC TGCAAGTCAG TGATCTAACC AAAATCTGTG 
    TTGCAAAACA AAGTATATCT TGCATGAAAA TAACTTACTC GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6782 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon13 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon12 (CDS)
    Flanking Genome Sequence: 11-0295-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGTCCCCAT CCTATACAAG GAAAGGTCAA TATAAATGTG TGCCTGTTAA 
    TGCATTTTGG TCTTCTTTAT ACTTCTCGCA AAGCATTATA TTTTCTTGAT 
    GTGTACAGGT TAGGTGAAAA GAAGTCAATA GTTCGATCAG AGAGAATAGA 
    AAGTAGAATT ATACAGCTGC ATAATCAGAG GCAAGTTTCC TTATAACTGT 
    AGAGAGCAAT TTTTAGTAAC ATTTATGTGA TCAATTTAGC ACATGCATCT 
    CTTTCTAAGA AGTGTCAGAT TAACTCATCA AAGCTAGAGA CATTTTGTTA 
    CATACAACAA TATTAGGTTT CTAAGTAGTT TTTGGGACAG ACAATCTTTG 
    TATTTATTAG AAAAGCT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR