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11-0299-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17176567 [Map]; Strand: c
      • AT2G41210.1 - [+] show detail - phosphatidylinositol- 4-phosphate 5-kinase 5
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 11-0299-1 - 5-prime edge 
    TTTGCAGAGC TCTTACTTGG GAATCAAGAA ATCTAAAAAC GCCAGAGACA 
    ACTTGAGACC ATCTCAATTG TCATCTGTGA AGACCTTGAA GATAAAGTCA 
    CGGAAACGCC TAGAGTATTG TCTCGGATCA ACCGCAGATA TAGAGGAAGG 
    ATCATACTGT ATGCTCTTGT AAGCGTGTTC AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17176683 [Map]; Strand: c
      • AT2G41210.1 - [+] show detail - phosphatidylinositol- 4-phosphate 5-kinase 5
        Distance: 0; Region: exon8 (3UTR)
      • AT2G41220.1 - [+] show detail - glutamate synthase 2
        Distance: -981; Region: promoter
    Flanking Genome Sequence: 11-0299-1 - 3-prime edge 
    TCTGCAAATA GGCTACCTTG CAAATATGAA GTTCGACGAA TCCCATTTCG 
    TTTGTTCGTT TGTTTCAATT TATAGATTTT GTATCAAGCT

AT2G41210.1

Model type
Protein coding
Short Description
phosphatidylinositol- 4-phosphate 5-kinase 5
Curator Summary
Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology.
Computational Description
phosphatidylinositol- 4-phosphate 5-kinase 5 (PIP5K5); CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidyl inositol monophosphate 5 kinase 4 (TAIR:AT3G56960.1); Has 28370 Blast hits to 7831 proteins in 606 species: Archae - 2; Bacteria - 4383; Metazoa - 4412; Fungi - 450; Plants - 2408; Viruses - 2; Other Eukaryotes - 16713 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41220.1

Model type
Protein coding
Short Description
glutamate synthase 2
Curator Summary
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root.
Computational Description
glutamate synthase 2 (GLU2); FUNCTIONS IN: glutamate synthase (ferredoxin) activity; INVOLVED IN: oxidation reduction, nitrogen compound metabolic process, glutamate biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 1 (TAIR:AT5G04140.1); Has 17295 Blast hits to 17192 proteins in 1999 species: Archae - 278; Bacteria - 5572; Metazoa - 117; Fungi - 161; Plants - 174; Viruses - 0; Other Eukaryotes - 10993 (source: NCBI BLink).
Link
InterPro Scan - TAIR