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11-0303-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18411724 [Map]; Strand: w
      • AT5G45430.2 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon13 (3UTR)
      • AT5G45428.1 - [+] show detail - conserved peptide upstream open reading frame 24
        Distance: 0; Region: exon13 (3UTR)
      • AT5G45430.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon13 (3UTR)
    Flanking Genome Sequence: 11-0303-1 - 5-prime edge 
    NNATGTTCCT CANACCTACA CAGCCTTCCA ATCCCTACTC TANGAAAATC 
    GCCGGTTAAG CTGAAAGATT CTGTTATGGC GCATCTAAGT TACGAGCCCT 
    CATCAACACC TTCACCCGTC GTTGTGCNTT TTGATTATCA TCATCACCTA 
    TCTGAGAGTC CAAGTTATTT GAAGACAACT TATGTTGATT TTTTCTCTTT 
    TGTGTTTCGT TCTTTTAAAC CTCTCTTGTT TGTTCGGTAG TACTTCCCGT 
    CTTCATGACG ATTATGTATG GAGTGTTTCT TTTTACAGTT CGCAATAAAA 
    GCTCTCGACA TTGCATCAAT TTTCCGTTGT TCTGGAATCG AACATTGGTT 
    TCAGATTCCC AAGATTCTTC ATTTTATGTC TATCTGGTTT GTCTTTCAGG 
    TGTTGTTGTT ATTGTTGTTT GGTTTACTTA TTCTGTGATA CTTGTAGATA 
    AAGAAGCTAT GGAGGAATAA GAAATGTATT ATGATTAACT GAGAAGTCTA 
    CAATGTCTAC TTCTACAAGT GCAGAGACTC GGAGATGGTA CGAGTAAAGG 
    ACATCTGATA AAACTGCAGA TTTAAGAGAA GGTACACAAG GAACTCTCTT 
    ATTTTTTCAG ACCCTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18411602 [Map]; Strand: w
      • AT5G45430.2 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon13 (CDS)
      • AT5G45428.1 - [+] show detail - conserved peptide upstream open reading frame 24
        Distance: 0; Region: exon13 (3UTR)
      • AT5G45430.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon13 (CDS)
    Flanking Genome Sequence: 11-0303-1 - 3-prime edge 
    GTCACCACTT TCTCCCACCC ACCCTGCCTT CATCGCCGGT TGTTGTTGCC 
    TTTGACTTTG AGTCCATCTT CCTCCAATTG TTGCATTTGC CAGTTTATTT 
    GCAGTCTCTG ATGCTCCACG GGAAAAGACC CAGTTCTTTT CCATAGATGC 
    TGCAACTGCA GAGTTTGAAT T

AT5G45428.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 24
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF24 represents a conserved upstream opening reading frame relative to major ORF AT5G45430.1
Computational Description
conserved peptide upstream open reading frame 24 (CPuORF24); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 25 (TAIR:AT4G19112.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45430.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45430.2

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.1).
Link
InterPro Scan - TAIR