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Mutant Lines
11-0305-1

11-0305-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 823555 [Map]; Strand: c
- AT1G03350.1 - [+] show detail - BSD domain-containing protein
  Distance: 0; Region: exon1 (CDS)
- AT1G03360.1 - [+] show detail - ribosomal RNA processing 4
  Distance: -982; Region: promoter

GNTNNGNGTA TGGCNNATNA NTATAACCTN TNGGCTTATA GNTTCNATNT 
ATAGGNTNAC CANGCCTCNN NCACCNCTGC AGGATNNAAN GGCTAATCTT 
GTGAAACGAG CCATCTCTCT GGATGATGAA GAAGAATTGA GCCTGGGATA 
TTGATGATGA AGAGGAGAGC AGCGAGAAAG TTGTTGAAGC TACCAAAGAT 
GTTTCAAGGT TGAAACTTGA AGGGAATGAT GGTATGGGTG GTGGAGATGT 
GAGTGAAACT GTGAAAGATG AAGTGGAAAG TACATATTCA GTGGCTAAAG 
TGAGCACGCA AGATGAAGTG ACAAGTGCAG ATTCAGTGAC TGAAGTGAGC 
AATGTTGGTT TGAAGACAGA TAAAGATTCT GAGGAAAAGA AGGAGACTGA 
TAGTGAGGAA GTTCCAGAAG AAAAATCATT TGTTGATGCT GCTCCTCCTG 
CGTCTGATGA GGCTCCAATC CAAGATTCTG TCAAACCAAC ATCTGATGAG 
GCTCCAATCC AAGATTCTGT CAAACCAAAA TCTGATGAGG CTGCTCCATC 
CCAAGACTCA GCTAAACCAG ATGTGGCTGC TTCTTCATCA ACTCAACAAC 
CATCTGAAGA GGATTTGGGA TGGGACNAGA TCGAGGATNT GAGTANCATA 
NATGGTAAGG AACNAGTCGG TCTGGNGGTA GTCCAAACAN AACTGAACTG 
NGTNAACNTN TGATGCTGCA N

3 prime edge [+] show sequence

Chromosome: 1; Position: 823664 [Map]; Strand: c
- AT1G03350.1 - [+] show detail - BSD domain-containing protein
  Distance: 0; Region: exon1 (CDS)
- AT1G03360.1 - [+] show detail - ribosomal RNA processing 4
  Distance: -873; Region: promoter

CTCGGAACGA CCCTTTTATA CACTCCTTTC ATATCACCAT TTTCCTCCAA 
CAATTTCTCC ATCTCCTCAG CTTTTCCATC CAGAGAAAAC GCAGATTCCC 
ACTTTTTGTA ATCATCTGAA TCCTCAGGCT CTTCACAGTA AGTGTTGAGA 
TCTCCTTGAA CAGCACGAAT CTGAGCATCG AAACGACTAT ATGGTTTCGA 
ACTGAAGCTA TCACGACGAC CAAAACTCTG ACTACTATTG TTATCAGAAG 
AATCAGATTC ATTACCAGCG GCTAAAATCG CTTCCTTACC TTGAGCAATA 
ATCTCAGCCG TACCTTTTAG CACCGTGTTC CCAAGCTCAT CAATCGCATG 
TCCCACCGTA CCAAGCGATC CCTGAGCCAC CTCGATCTCT TTCTTCAAAC 
CTGTGCCAAA TTCTTCGAGA TCTCGTCGGT AGGTTTCAAT CACGGATTCG 
GATCTGGTGG CTAGAGTTTT CATCAGACCA CCGAAGCTCC ATCCACCGTC 
GTCGTTAGAT TCAGATTGCT CTGGATGTTC TTGCTCTGGA TGTTCATGCT 
CTTCGCTGTG TTTCGGTGAA TCGGATTCGG ATTCGGTTTC TGGAGGATCT 
AGGTCTTCCG TGAAGACGGA TTTGAAGAAA TTCATAGCGT AAAGCTCANA 
TCTTACCAAT CGGGACTCTC AGATAATTTG TTTGATCCGT GAAAGAATCA 
ATTGGAAGAG TGAAGGATTC GAATTAC

AT1G03350.1

Model type: Protein coding
Short Description: BSD domain-containing protein
Computational Description: BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT4G13110.1); Has 10642 Blast hits to 5945 proteins in 665 species: Archae - 52; Bacteria - 3714; Metazoa - 2927; Fungi - 1314; Plants - 393; Viruses - 71; Other Eukaryotes - 2171 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G03360.1

Model type: Protein coding
Short Description: ribosomal RNA processing 4
Computational Description: ribosomal RNA processing 4 (RRP4); FUNCTIONS IN: exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 615 Blast hits to 615 proteins in 291 species: Archae - 147; Bacteria - 0; Metazoa - 136; Fungi - 134; Plants - 55; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
Link: InterPro Scan - TAIR