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11-0307-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8005334 [Map]; Strand: w
      • AT3G22590.1 - [+] show detail - PLANT HOMOLOGOUS TO PARAFIBROMIN
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-0307-1 - 3-prime edge
    GTCTTGATGC CGCTTATTCT TGCTAATCTG ATTAGTTCAA AAAACACAAA 
    AGAAGTTCCT TGTTTCAGTT AAATCATATC TCAATGATAA CTCTAACATA
    ACAGCAAACA AAAAAGGTGT CAAATCTCTC ACCGAGATGA TCTTTACATT
    CCACTGCTTC ACCGTCTTGG CTGATTCGAT ACTATCATCT TCAAACCGCA
    AGAAGAATCC AATAACNTGC AAACAATAGA CAAACTGTCA GCTAAAACCA
    CTCAAAACAA AAACCAAAAG ATTTGAACTT TTCAGCATCT AATACTCCAA
    CAATCATATT TCCTTACTCT TATTGAATAT CTCAACATGA TCCTTAAAAG
    GCCAATCTTT AAACTGCCAA TCCTTCCCCA ATACAAAAAC CGCAACAACA
    CGATCCCAAT CATCAGGCTT CAAAGCAGAA GGCTTATCCC TAACTTCATA
    AGCAGTCACA ACTCTCTCCC TATCTCTACT AAACTTCTTC TGAACCGTAA
    TACAATCAGG CTTCAACCCC TTCATCTCCT TAGCCTTAAC ATCATTAGGT
    ATATAAACAC CATCTTCAAG AAACTCTTTA ACGTTATATA TAGTAATCAA
    AGTCTGAAAC GCACTCGGGA CAAGAATAAT CGGCACACCT TCACCAATCT
    TCCCAGCTTT AAAATGAAGC TTAGATTTAG GATTAGCATC ATAACCATTA
    TCATCACCAC CACCACTACT AAACCCTACA ATACCTCTTT CTTCAGCTC

AT3G22590.1

Model type
Protein coding
Short Description
PLANT HOMOLOGOUS TO PARAFIBROMIN
Curator Summary
Encodes PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP), a homolog of human Paf1 Complex (Paf1C) subunit Parafibromin. Human Parafibromin assists in mediating output from the Wnt signaling pathway, and dysfunction of the encoding gene HRPT2 conditions specific cancer-related disease phenotypes. PHP resides in a ~670-kDa protein complex in nuclear extracts, and physically interacts with other known Paf1C-related proteins in vivo. Loss of PHP specifically conditioned accelerated phase transition from vegetative growth to flowering and resulted in misregulation of a very limited subset of genes that included the flowering repressor FLOWERING LOCUS C (FLC).
Computational Description
PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP); CONTAINS InterPro DOMAIN/s: RNA polymerase II accessory factor, Cdc73 (InterPro:IPR007852); Has 502 Blast hits to 395 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 127; Plants - 42; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR