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11-0310-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10126444 [Map]; Strand: c
      • AT4G18330.1 - [+] show detail - Translation elongation factor EF1A/initiation factor IF2gamma family protein
        Distance: -135; Region: promoter
      • AT4G18330.2 - [+] show detail - Translation elongation factor EF1A/initiation factor IF2gamma family protein
        Distance: -135; Region: promoter
    Flanking Genome Sequence: 11-0310-1 - 5-prime edge 
    GGTNNCGCGG TNCGANNNAG NNNNANACNN TGCCNNGGNG CGCNGATNAT 
    NATTNAGAGC CGGAAAACNG TCATANCGAC NATGACANGN ACCATGNGAC 
    NACCNNGNNG CTNTANNTNG TGNACTANAN NNANCAAGTC TNTACNGGAN 
    NGTTAATCNN NAGCTGNTTT TTGTTATCGT ANCACGTGGA CAGTCCAANG 
    NCCTNTAAAT CANANTTGCN CGNATAGACG TTGACAAATT TATCTGTACG 
    ATATGTTAAT ATACTTGNGA CATGTTCTAC ATATATTAGC GCAGAGATGT 
    ACAACGAATT TAGAGTTCTT TGTTTGTCTA TTAAATTTAA CGTAAATATA 
    AATTAAAAAA ATATCAGCAT TTTTATTAAC AAACCAAAGT AGAGTTTTAG 
    CTACACCACA ATAAAGTAGA GTTTGCAACA CAATAATACA TAGTAAATAC 
    AACAAATCTT AAACCACACA NAGTAAAAAG ATACTTANCG AAAAAAAAAC 
    AGATATTGTA TAATTACTAN AGTCATGAGG NGGATATNTA TAAAAGANGA 
    AGAACATGNG GNTTAAGCGN GGANCNTTCA AAGCCAAACT CCGGNAATGT 
    AAAGAANCGC TNCCANCGGA AAACNCCGGN NTTTGNNGNT TGNGCACTNT 
    NTCNNCGATN AGATTNTAGG GCCCAATAAA GGCNAAAATC GGGGGGAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10123529 [Map]; Strand: c
      • AT4G18320.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -992; Region: promoter
    Flanking Genome Sequence: 11-0310-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGTTAAACTA TATGATTTTG CCTTATAAAG AAGATGAATT TTTCATTAGT 
    GTCAATTCTT CTTTCAACTG TTTTTATTAG AGGCAGCTGT AATTAGAAAC 
    CGTCGAAAAA GAGAGAGATT CAAATTTCTT TAAAATATTT GTTTAGAAAA 
    TAGTAAAATG AAAACTTATA CAAAAGATGT ATTTTCATTT TTTATTTGCT 
    TTGAAAACTC TACAAAAACT TACTTCCCGG ACCCTAAAAA CTTAAAATAT 
    TTGTTTTTCT GGAAATAAGA AACAAACTGG CAATGATAAT GATATGTTGA 
    CTAGGCTATC AGAAGAATT

AT4G18320.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18310.1); Has 37 Blast hits to 37 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G18330.1

Model type
Protein coding
Short Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein
Computational Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 gamma subunit (TAIR:AT1G04170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G18330.2

Model type
Protein coding
Short Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein
Computational Description
Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 gamma subunit (TAIR:AT1G04170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR