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11-0311-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 222860 [Map]; Strand: w
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-0311-1 - 5-prime edge 
    TTGCTACCAG TGAGTCTTCT TTTGATTTTA TTTTTGTTGG CTAGACNNTC 
    CCGGGCNNGN NACNACTGCT TGCNCTGTAT GAATGATGTA GCTGGGAGTG 
    ATTGATATGA ACTCGGAAGT GGTGGAACCG GAGGAGCNTT TTGGATCAGT 
    TAAGAACTTT AAAGTCGGTT AATGTTGATG GTGTTATGGT TGACTGCTGG 
    TGGGGAATTG TTGAGTCACA TACACCACAG GTTTATAACT GGAGTGGTTA 
    CAAGAAACTT TTTCAGATGA TTCGTGAGCT TGGACTTAAG ATTCAGGTAA 
    TGTTATTTGA TCGATGAGTC TCAGTTCAGT TTAGTGAAAG ATATGCAGAG 
    TTGAGGATGA ACCTTTTTAA AGTGTTCTTG ACTTGAATTG ACTTCAGGTT 
    GTTATGTCGT TTCACGAATG TGGAGGCAAT GTTGGAGATG ATGTGCATAT 
    ACAAATCCCT GAGTGGGTGA GAGAAATTGG TCAAAGCAAT CCTGACATCT 
    ACTTCACTGA CAGTGCTGGC AGGCGTAACA CTGAATGCCT TACTTGGGGA 
    ATTGACAAGC AACGTGTTTT AAGAGGACGG ACTGCTCTTG AGGTATGGCT 
    TTTCTACTAC TCCATGCTAA AAAATCTGAN CAAATTATCA TTCNAAAAAT 
    GTAATCTGCA NCGAGTTGTN NTNGGAAAAA TGAAAAGTTG ATCNGTATNA 
    NAAGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 222744 [Map]; Strand: w
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0311-1 - 3-prime edge 
    TAGCATAACA TATACAGGAA CACACGCTGT GCCAGCAAAA TCACGCTCTT 
    CGAAATGCAC AATTTCTTCA TCAACCTAAC AAAACGAAGA GTAAAATTGA 
    TTCTGGTCAC AAACGAGTGA ATCATCCAAA TGAAATTCCA CACTTACGAG 
    CTGATCAGTA GAATCGTCGT CGTCATCAAT TGGAACTCGA TCTTCCTCAG 
    TACTCTCTGC TCTCAGTTTC ACCTTCGCGA GAACCAAAGG CCTAGCACCG 
    GAAAATGTAG AAACACCACG CCAATCTCCA ACGCTGAACG GTAACGAGCT 
    CCGAGCCGAT ACTCTCGTCG GAGCTCCAAG CT

AT4G00490.1

Model type
Protein coding
Short Description
beta-amylase 2
Curator Summary
Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description
beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR