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11-0312-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6152628 [Map]; Strand: c
      • AT1G17870.1 - [+] show detail - ethylene-dependent gravitropism-deficient and yellow-green-like 3
        Distance: -406; Region: promoter
      • AT1G17880.1 - [+] show detail - basic transcription factor 3
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 11-0312-1 - 3-prime edge 
    GAAGAAGCAG CAGCAGCTGG TGCTTTCTCT TCAGCAGCAG TTTCGAATGT 
    CTCTCCAACA AGCTCTGGGA CATCGTCATC ATCCTCTTCT TGAATGGTTG 
    CTGAGGCGGC ATTACCTTCA CCAGAAGCCT GTTTCTGGAA CTGCTCTGCT 
    AGCTTCTTCA GGTTGTCCAT GTTGTCTGGT CCTGAAAGAG ATCAAAGTAA 
    CATAAAGTTA GAGACCTTAG GATCGATGAA GAACATTTAA GAGCTGTACA 
    GTTACATGGT ACACACCAAG TTGGCTGATG ATCTGAGGAA GGATATCTTG 
    CAATTCTGCA GGAAGCAACA GGTTTACATT AATCAGAGAA GATGAAATGA 
    AGAAGAAACA AGAAAGTAGA GATTAAGAGA TATTATGAGA TGCAATACTT 
    TTGGTCTGAG GAGAACCGCT AACAACCCAT GTGTTTGCAG CAATTGAAGC 
    T

AT1G17870.1

Model type
Protein coding
Short Description
ethylene-dependent gravitropism-deficient and yellow-green-like 3
Curator Summary
S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442
Computational Description
ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 (EGY3); INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: Peptidase M50 family protein (TAIR:AT5G35220.1); Has 660 Blast hits to 652 proteins in 203 species: Archae - 107; Bacteria - 240; Metazoa - 53; Fungi - 13; Plants - 117; Viruses - 1; Other Eukaryotes - 129 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17880.1

Model type
Protein coding
Short Description
basic transcription factor 3
Computational Description
basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Link
InterPro Scan - TAIR