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11-0324-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30238002 [Map]; Strand: c
      • AT1G80420.4 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -231; Region: promoter
      • AT1G80420.1 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -286; Region: promoter
      • AT1G80420.2 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G80420.3 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -274; Region: promoter
    Flanking Genome Sequence: 11-0324-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AATGGTAATT TGACCTTGGT 
    TTTGTACTTC TTTTAATTCA TAAACCCCCT CCAGCGTAAA AATGAAACAT 
    TAGAAATCCT AAAAGGGCAG AACAAGTTGA TGTCCAAAAA AAAAGAAAAA 
    AGGGCAGAAN AGTAAAACGC CGAATGAAAG AGTCAAAGCA AAAAATTGGT 
    AAAAAAAAGC GTGAACGGCA GGATTCNAAC CTGCNCGGGC AAAGCCCACA 
    TGATTTCTAG TCATGCCCGA TAACCACTCC GGCACGTCCA CCTTTGCTAG 
    TTGAATCATT TGTTAAATTG AAAACCCGTC ATTTTGATCT GATTTTGTAC 
    TGTATGTTGA CAAATTGAAT AGTCTCTGAT GATTTCNATC AAANANAANC 
    CACGGGGGGA GCGGTAGCNC TTAAAGGTTC CTCGCTTTCT TCTNAAGTTT 
    ATAGTCTTCT CCTCTGNGTN GGCTCATTTA CATGGGTANA TTTAGTTTTC 
    NAGGGTTTTA TGGCGAANTT CGCNATGTTC TGTTAATTGC AATGTCTTTC 
    TTTTTTTTTT TTTTTTTTTT TNGGGGNNNN NNNCCCNNNT NCCCNGGGGG 
    NTTNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30238044 [Map]; Strand: c
      • AT1G80420.4 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -273; Region: promoter
      • AT1G80420.1 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -328; Region: promoter
      • AT1G80420.2 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G80420.3 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -316; Region: promoter
    Flanking Genome Sequence: 11-0324-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGACTAAATC ATTCCTCGTT TCAATCTTTT TTTCCTAAGT TAGCTCAGTC 
    AAATCCTTCG TATACCTACA ATGAGCTCGA TGAATTAGAC TTAATGCACT 
    GGAGAAGCTA AAGCT

AT1G80420.1

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.2

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.3

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.4

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357).
Link
InterPro Scan - TAIR