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11-0328-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17396441 [Map]; Strand: c
      • AT4G36910.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: -3102; Region: intergenic
      • AT4G36920.2 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -4169; Region: intergenic
    Flanking Genome Sequence: 11-0328-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCTATCGAT ACCGTCCGAT GTTTTCCACG CGTTCGTTAA TCTCGTACTT 
    GATTGCGATT CCAAAATTGC AGTTTTTTTT TTATAAGTAN ACATATCTTA 
    AAATTTAAAT NCAANCAGTN GTATATCTTT TACCTTCTAT CAAAATAANA 
    ACATTNGTAT TNGATATTNA TTCATAGTAT GTCAAACNGC CANANATGAT 
    TATAGTATTC ATACAGCAAG ATCCACAGTT TNGATTNGCT TTCATATTCA 
    AACAAGTANA TCCAAAAATT ATNGGACATA ACCATTAATA CATGTAACTA 
    TGATATACTC TACGNGTCAA TATTTTNGTT NGAGTAGCTG AAAACGNGTN 
    TNTATNATTT ATNANATAGT TTCTGAAAAA GTTAANGGNG GAANANAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17396377 [Map]; Strand: c
      • AT4G36910.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: -3038; Region: intergenic
      • AT4G36920.2 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -4233; Region: intergenic
    Flanking Genome Sequence: 11-0328-1 - 5-prime edge 
    ATCGATAGAA TCTCGATTTG TGAGGTTGTC CAAATCTTGT TAGTCTTCCA 
    AAATCCAAAT ATCGTTAAGT AGGATC

AT4G36910.1

Model type
Protein coding
Short Description
Cystathionine beta-synthase (CBS) family protein
Curator Summary
Has a cystathionine Beta-synthase domain.
Computational Description
LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2 (LEJ2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT4G34120.1); Has 8411 Blast hits to 7757 proteins in 1885 species: Archae - 1245; Bacteria - 5956; Metazoa - 278; Fungi - 143; Plants - 147; Viruses - 0; Other Eukaryotes - 642 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G36920.2

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.
Computational Description
APETALA 2 (AP2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 3 (TAIR:AT5G67180.1).
Link
InterPro Scan - TAIR