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11-0329-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23426960 [Map]; Strand: w
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: -622; Region: promoter
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: -732; Region: promoter
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: -598; Region: promoter
      • AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon8 (3UTR)
      • AT3G63450.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon8 (3UTR)
      • AT3G63450.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 11-0329-1 - 5-prime edge
    CTTGANAAAC NNACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA ACAACCAACC TTCCCCCCAT CTTCTTCTCT
    ATCTATCTTA CATCCACGTC TCCCTAATTG CTCTTCACCT TTTTTCCTTT
    TTTTNGGTTA ATCTNCTCTT CCTGCAANGA CATGCCAAAT GACTTTTTTA
    CATTGCGATA CAAATCTCTT CCATATCCAT ATCACACTAT AACCAAATTT
    ACTCCTCTCA TCANACTACC TACCTACCAC NGGTTAGCTG TTTNGAANGG
    GTTTAGATCG ATCACTATTC CCCTGTCTCG AGGACNGGTT CCTTNGNGGC
    AGACGACAGA GACAAAGGAA GAGACAAGTC TAAGTACNGT TNAGNGGCCA
    GTAAGCANAT GGTNGGGATA TTCTTAACCG TTGGGGTCAA GAGNGATCTA
    AGGGACAGTG TCAACAACCT CAAAGNGTCT NGCGTTGGGA GAGGCTTGAN
    GGGTTATCTT GGAANCAAGG TCAAAATTCC ACATTCCCAA ATCCCCGTGT
    NTGGATATAC GGCNCAANAA TATCTNTNGG CTTGNCAAAG TTGGNATCTT
    TTTAATCGGN GGGGCTCCAT TTCTATCAGC ATGTCCGGTC ANCAGACAGC
    TACNAGCCCG GGGCCGTCNA CCACGNGGGG CNCGNTNNGA GNGAGGGGNG
    AGGANGGNGN GAGAGGNGGA NANNAGCGAA NGNNNAAANN CCNATNNGNN
    GNGGNNAANN GGANNAAANG CGNAAAAAAG

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63450.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63450.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63450.3

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2).
Link
InterPro Scan - TAIR