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11-0341-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26474253 [Map]; Strand: w
      • AT5G66270.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-0341-1 - 5-prime edge 
    ATGTTGAGGA GCAAGTCTAG GTTCGGTGAT GTCAGTGTTT AGACTGTTAT 
    TTGCAGTTTC AAGTGGTTTA CCTTTCATGC CATTGATCAA GTTCTCAACG 
    ATTTTGGGGT CACTGAGTAA CNTTGACAAG TAAATCAGGA TCGACCTGAG 
    AGCCCTGTTC CTTAGTTAAG GCAGACAAAG CTGCAGAAGC AAGAAGACTT 
    AACTCTGGTC CAAGTCCAGA AACAGCTGTA GGAGCTTCGA AACTGTGGGA 
    AGATTCAGCA GCAGCGTCAC GTTCATCTTC AACGTGAGTG AGAGGGATAT 
    TAGGAGTTTT GCCGTCGTCA TAGTGTTCTT CTTCAACAGC TAGTGTGAGC 
    GAAGGACTAG AAGAAAACAG AGAGAATTTG ATAAGTGGAA AAACATGACA 
    TGGCACAAAA GCAAATCCTC AAATGATAAA ATTACCGAGA AGGGATGACA 
    GAGCGATGTG GATAGAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26474137 [Map]; Strand: w
      • AT5G66270.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-0341-1 - 3-prime edge 
    CTCAACATGT CACCTCCACA ACCATGGACA GAAACCCACC TCCCATGCCT 
    GGAAATGTTG CGCCACATAA TGTACCTGTT TCGGTTCAGT CCAGTGCTAC 
    AGATCCTCCA CTCCCCAAAC CCAAN

AT5G66270.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT3G51180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR