1. Home
  2. Mutant Lines
  3. 11-0343-1

11-0343-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16299625 [Map]; Strand: c
      • AT5G40720.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0343-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTGCCAATCC GCCACATAAG TCGCTACTCT 
    CCTTTTAAAC TTCTCCTTAA AAATATCCCA AACCTGATAT TTATAATGGT 
    TAATTACCAT CGTACTCTTA TCCACGTCAA CAAACGCNGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16299562 [Map]; Strand: c
      • AT5G40720.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0343-1 - 3-prime edge 
    NNGTNNNGNA NAGAAANNGN NGNAATNGNA NGNNAGNNNN ANGAGGNTNT 
    NNNNNNNNTA TNGTAAANGG TCCGAAGTGT TTTACCGACC GTTACCGACC 
    GTTTTCATCC TNNGCAAAAC GAAGAGAATG TCGGGTCGAA AGATCGGGCA 
    CCTGGTTTAG GGACCCGACC CGTTGAACCG TCTGATTGGG CTGAGAGATT 
    CTGTGAGGTG AGCNATATTG GGCTTATGGA TTGGGTGTTG GANAAATTNA 
    NTGACCGTAA AACGGCANCG TGTTANTTTG GGAGAGAGAA NNAGAGGAGA 
    GTGGAANATG AAANTTATAG NTNAAATGGG CTNCGTGGGC CNATANAANA 
    NNNGNNCGGN NNANGATNAA NCCANCAAAA GCCCAATANG NTTTGTTTTT 
    GTTCGNGAAA NTCACGCGGG AAAAAANATN NNTTTNNAGA TAGGGACNTA 
    TTTTGCGNGA TTNTNTAATN NNTNNNATNT GGANTNNNNA TANNAACACN 
    NNNNGCNNNC NCTATTNGNN CTTNCTANNC NNGNTTCCTT NNNGNTNNCN 
    GNGNNTAAAC NNTNNTNAAN GNNNTANCAN TCNCTNATNA ANATNTAGTA 
    TNAATNGAAN GGTTGNTNAN TTNTNTTTTN GNANTNANGC GNATGNNGGA 
    ANNTNTNNTT NTTNANCANT NTNGGGANCN GNTNNNANGN NNNNNTNAAG 
    GTAANNNNNN AGCNGNNTTN GAANTGTNCT TATNNTCNNT NANNAGTAAN 
    ACGAGNNTNA NGGATNTNCA ATNNCAAGAG CNNTTANNNC TNCTNNNNGA 
    TCGTNGNTNN NTATTAAGNN ATTGAANNGG NNNNNNGATG NGNGNNANNA 
    NNNNNAGTTG TGNTNTGANT NNNGNAGANT NNNNNAATTT CAGCNNNTAG 
    GTNAATCGNN TCANNTNTNA NG

AT5G40720.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF23)
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR