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11-0346-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25266305 [Map]; Strand: w
      • AT1G67440.1 - [+] show detail - Minichromosome maintenance (MCM2/3/5) family protein
        Distance: -586; Region: promoter
      • AT1G67450.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0346-1 - 5-prime edge
    TCTAGGAGCA GTGAGATCTA CTTGCAAACG ATGGAACGGT TTATCCAAAG 
    ATCGTATTGT ATGTAAAGGA GGTGCAAATC AACAGTTTAC AGGGTTCACG
    AGATATGTGA ACGAATCTAC GGTTTGTTCA ATGAGACTTG ATCTTAATGA
    AATCCAAAAT GAAGACGTTG AACTAGTTGA GCTCTCTATA AATAAGATAA
    ATAAATTTAT TGAACTTGAG TTATTTCAAG TTTATTACAG CGATGGCTTG
    TTGTTATTGG TAACTGATGA GGTAGATTCC AAGCTCGTGG TTTGGAATCC
    GTATTTGGGA CAAACCAGGT TGATCCAATG CAGAGATACT GAGCATTTCA
    AATATAGGTA TGCTCTGGGA TACGACAACA ACCGTAACCA CAAAATCTTG
    ATGTATAATA GGAAAAATTG TGAGATCTAC GATTTTAAAT CTGATTCATG
    GAGGGTTCTT GATATCATTC CCGACTTGCA TACAAATATT TATGTACGTG
    ATATGTCAAT AAAGGGAAAT ACTTATTTTT TCTACCGAGG AGAGAAAATA
    GGGGAAGGAC TAGCTGGGAT GCTTACTTTC TTTTGATTTT ACAAGAGAGA
    GATTTGTGTC GGGGCCTTCC TCTCCCCATT TNAAATTGCT TAAGNTTGAT
    GATTATTGNA NCTCTATCTT NTGNTAGAAA GGAACATCTT GGGGGGTTAT
    TTTAATAAT

AT1G67440.1

Model type
Protein coding
Short Description
Minichromosome maintenance (MCM2/3/5) family protein
Computational Description
embryo defective 1688 (emb1688); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), EngC GTPase (InterPro:IPR010914), GTPase EngC (InterPro:IPR004881); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G67460.1); Has 5395 Blast hits to 5393 proteins in 2047 species: Archae - 18; Bacteria - 4575; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67450.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G13680.1); Has 1191 Blast hits to 1143 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR