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Mutant Lines
11-0349-1

11-0349-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 1291020 [Map]; Strand: w
- AT1G04630.1 - [+] show detail - GRIM-19 protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G04635.1 - [+] show detail - ribonuclease P family protein / Rpp14 family protein
  Distance: -294; Region: promoter

ATCCCTAGAA CACTCGATTT CAGCAAAATC AAATCGGATT CAGTGATCAA 
AAGTCAATTT GGTCGAGAAG AAATTGAGCG TTGAAGATGA CGGAGGCGAT 
GATAAGAAAT AAGCCAGGAA TGGCGAGTGT GAAGGATATG CCGCTGCTTC 
AGGATGGTCC GCCACCGGGT GGGTTCGCAC CGGTCCGATA TGCCCGCCGG 
ATATCCAATA CGGGTCCTAG TGCAATGGCC ATGTTCCTTG CCGTTTCTGG 
TGCCTTTTCT TGGGGAATGT ACCAGGTCGG CCAGGGAAAC AAAATCCGCA 
GGTAAGAACG ACTTGTAATA GCTCGTTCAC ATTTCAATTT TTCCTCTAAA 
ATTCGAGATC GCCTTGGTAA AATTAGTGTT GTGGAGTGAT TGATGACCAT 
AGTAATGTAG TGAAGAATAC ATTTTGGTTA ATAATTGTTG AAACTTGAGT 
ATGTTTATCG TAGGAATTGG TTAATATTAT TAACCTATGG AAACATAGGC 
TTGTTGAATC ACTGTTATGT ATTCTGTTAT TAGTATTCCC CGACATTTTG 
GTTGAAGCT

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 1291136 [Map]; Strand: w
  - AT1G04630.1 - [+] show detail - GRIM-19 protein
    Distance: -24; Region: promoter
  - AT1G04635.1 - [+] show detail - ribonuclease P family protein / Rpp14 family protein
    Distance: -178; Region: promoter
  - AT1G04640.1 - [+] show detail - lipoyltransferase 2
    Distance: -944; Region: promoter
  - AT1G04640.2 - [+] show detail - lipoyltransferase 2
    Distance: -975; Region: promoter
Flanking Genome Sequence: 11-0349-1 - 5-prime edge
```
CTAGGGATTC CGATGAACAA CGAAGGGAAC GTTGGAGATT AACTAGGCTA 
GGACCATATA ACTAAGCCCA TTAGTTAGCA AATCACGGAG TCGTATGAGA 
TGAAATGGGC TATAACTAAG CCCATTTCAG ATATGTTCAA AGACCCAAGT 
CCATAAGTAA GCAAGTCACN GTGGAGTCAC NGTGATTATC TTCTTCTTCT 
TCTTACATAT AAAATGCCCT AACTACATGT TCAGAATATC TTTAGCCGCC 
GACTTGGTAT CATCAAATCG AGGAGATTCG AAGAAGCATG GTGGGATTTA 
AGAACAGATA CATGTTAATG GAAGTTTTTC TGGATC
```

AT1G04630.1

Model type: Protein coding
Short Description: GRIM-19 protein
Computational Description: maternal effect embryo arrest 4 (MEE4); CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: GRIM-19 protein (TAIR:AT2G33220.1); Has 332 Blast hits to 332 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 83; Plants - 65; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04635.1

Model type: Protein coding
Short Description: ribonuclease P family protein / Rpp14 family protein
Computational Description: EMBRYO DEFECTIVE 1687 (EMB1687); FUNCTIONS IN: ribonuclease activity, ribonuclease P activity; INVOLVED IN: tRNA processing, embryo development ending in seed dormancy; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Ribonuclease P-related (InterPro:IPR002759); Has 266 Blast hits to 266 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 108; Plants - 56; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04640.1

Model type: Protein coding
Short Description: lipoyltransferase 2
Curator Summary: Lipoyltransferase, located in mitochondria but not found in chloroplasts
Computational Description: lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1); Has 5700 Blast hits to 5697 proteins in 1675 species: Archae - 17; Bacteria - 3180; Metazoa - 102; Fungi - 137; Plants - 98; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04640.2

Model type: Protein coding
Short Description: lipoyltransferase 2
Curator Summary: Lipoyltransferase, located in mitochondria but not found in chloroplasts
Computational Description: lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR