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11-0365-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 45286 [Map]; Strand: w
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0365-1 - 5-prime edge 
    GATACGATAA ATGACTTCTT CAACGTTCTC TTTATGATTT TTGGTGTCAA 
    TTTCTAGTTC TTAAGTTGTT TTATTTGACG ATTTAACAGG ATCTCTCCCC 
    CATAACTCAT TACACNGAAG TGGGGACNGG CTTCTTTCGA CATTAAGGTA 
    TTGCCCATTG TTTAAATTCT CAAGTGGATA AGTAAACTTA TAATCACCAC 
    TAATTATATA TAAGTATATT ACTAATTAAT CGGTCTAATT AAGATACCGT 
    CTAAATGTCG TTGTCCACAT GAAATTTCTA TATGTTGCGT TCATTTCATA 
    GATTTAAAAT CGACAAAGCT AGAAGATAAA TTTTCAAAAT GAGACCTCAC 
    ATCTTCTTTT CACATTGCCT TTAATGAGTT CAAGACAAAA TACCCCGTTT 
    CATGCATTAA TGTTCATACT TGTTATATTC ATCAACAATA TACCAGTACT 
    ATGCAACATC AATTAATTAT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 45217 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2020; Region: intergenic
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 58; Region: intergenic
    Flanking Genome Sequence: 11-0365-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGATCCAGCT CATATTTCCT AGCTAAGATC AAATCAAGGC CGTTGAAAGG 
    GCTTGTAAGA AAATGTCGAA GAAACCGTGG GGTTTAGAAG AAAGACAAGA 
    AATAGAAGAA CAATGATGTT AAATTGCCTA TTTTGGTGTA TAGGAGTTGT 
    CAAAAGAGGA GAGAGAGAAG AAAATTAGGT CAAAATAATG AGCACTAAAA 
    ATGGAGACAT GTGTTGAGTA ACTATTACAA GAGCGACTTA TGCTTCCTTA 
    TGGCAATGAT ATCCAAACCA AAGTGCAACG CTCCTTTTTT GCCCTAATTT 
    CGTAAAGTCT CTCTCCTTCT TCGTCCTTAG GAAAAACCCT AGAAATTTAA 
    TCCCTTGTTC TTGATCTTGC TTTTTGAGTA ACCATGATTT TGACCACACA 
    CTATTTCTTC TATCTTTTGT GGTCTATAGG ATTTTGCTTT ATATGTGTTT 
    CTTGTATTGC TCCGTACGTA CGTATACGAA TTTAAATGGT TATAACAAGG 
    TTTATATAAA CTAGCACAAA TGAGTCCATG AAATTTGTTA GCGAAAAAGG 
    TAGAAATATA TTGAGTCTTT AAACGGCAAT ATATATAATT TTGCTGCAAA 
    ACTTANCTTT AATCATGATC TAATGATATT TTCTTTAATT TCCTTTGCCA 
    AATTAATCAC ATGCNCGGAT TTTTGGCAAG TTATGTGTCN AATT

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00124.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR