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11-0370-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22170179 [Map]; Strand: w
      • AT5G54569.1 - [+] show detail - other RNA
        Distance: 0; Region: exon5 (NonCoding)
      • AT5G54570.1 - [+] show detail - beta glucosidase 41
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0370-1 - 5-prime edge 
    GTTCCGAATA CAAACCCATC TGGAAAATTT GCTCGGCTGA TAGATTCTGA 
    AGAAACATGA TCAAGAGGTA CGAAGAAGAC GACGAAGAAC GGAAACAGAA 
    CTAAGACGAG TCTCATCAAA GATTCCATTT TTGGGTCGCG TGAATAGAGA 
    AAGTGAGAGA GAGAGAGAGA TAAAGGGATG GAATTTTATG GTGAATGAAA 
    GATTTGGAGG CAAGAAAATG GAGTTTTGGT GTGTGTGTGT TTTTAATTTG 
    TAAAGTTGAA GAAGAAAGAG GAAGAGTGCA AAACAAAAGC TCACGTCTTT 
    TGANGGCTTT TCTTTGGTTT TGACATTTGT TCTCTCTACT TTTACTGCAC 
    ACGTTTCTTA TACTTGTGCC AAAAACTTTT TAAAGTTGTT TACTCTCCCT 
    TAAGATAAAA AAAAGTTTGT TACTGAGTGA CATTGATTCA CCTAACTACC 
    TATGTCCTTT TTTAAAGATA TTCTTCTTGA TAGTCTTGTT NTTTGTANCC 
    CCAGNTTACG TGATAATCAN ATTAAATTCN TAGANNGAAT AATATATTAT 
    GTNCTTTATT TTTGAGATGA GTTATAATTN ATNTNTAAAT ATANGGGAAC 
    CTTTTNTGNN AGCATCCATA CCNTTTATAT NTGTNTTTTT TTGGGGGGTT 
    ACACTTATNC AAAAAAANGG GGGGGNNTGN CCTNTGGNNA AAANTNGGGG 
    GGTTTNGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22170063 [Map]; Strand: w
      • AT5G54569.1 - [+] show detail - other RNA
        Distance: 0; Region: exon5 (NonCoding)
      • AT5G54570.1 - [+] show detail - beta glucosidase 41
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-0370-1 - 3-prime edge 
    TTCGGAACAG CTTCTTCAGC TTACCAGGTG ACATTCTTCT TCTTCTTCAT 
    CTTCTCCAAA CTGATCCAAC AAAGAAAGAA CGAAGATTTT GACAATCGCA 
    ACATTTTCTT GCAAGAAATC AGTTCGAAGG AGCNTGTGAA AGAAGGAAAC 
    AAAGGAGAAA GCATATGGGA CACTTTCACG AAGGAGAAAC CAGGTATCAA 
    AGAAACAAAC CCAGAAAACA TCACGAAGGT TTTAGTTAAC TCAATGGTAT 
    CGTTCTTGAT CAACAGGAAA GATACTGGAT TTCAGCAATG CGGATACTAC 
    GGTTGATCAA TATCATAGGT TTCACGTAAG TTTTACCTAA CAATTACAAA 
    TTTGTTGACT TAAGCT

AT5G54569.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G54570
Link
InterPro Scan - TAIR

AT5G54570.1

Model type
Protein coding
Short Description
beta glucosidase 41
Computational Description
beta glucosidase 41 (BGLU41); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 40 (TAIR:AT1G26560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR