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11-0397-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17277490 [Map]; Strand: c
      • AT1G47056.1 - [+] show detail - VIER F-box proteine 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0397-1 - 5-prime edge 
    GATTTCACAA CCTGACTACA CATCGAGTTT ACCTGACGAG TGCTTAGCTT 
    TGGTGTTCCA GTTCTTAAAC TCCGGTAATC GGAAAAGATG TGCTCTGGTT 
    TGTCGTCGGT GGATGATCCG TCGAAGGACA GAATCGTTAC CGTCTTTCTC 
    TCCACGCTCG CTCAGATCTG ATTACTTCGA TTCCTTCTCT CTTCTCTCGA 
    TTCGATTCCG TTACTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17277606 [Map]; Strand: c
      • AT1G47056.1 - [+] show detail - VIER F-box proteine 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0397-1 - 3-prime edge 
    GTGAAATCTC AGATTCGATT GATTCAATCG GGAATTTCAG TGTAAACGAT 
    TTGCTTCGTC GTCGATTGAG GATGGAATTT CCGGCGGCGG AGGTTGATTG 
    GCCCATCCAC GAAAGTCTCC GGTGGTCGTC GTCGTCGTCT GCGGCGTAGA 
    GGAGAATTTT GATTTCGATT TTGGATATTG ATTTTGTCGG TTAGTGAGAT 
    TGAGCGTTGG TTTAAAGGTA AGGTTGTGAA ATTAGTTTGT GGAAACTGTT 
    GCTTACAGTT TTCATTTAGA TTTTTGAGTG AAATTGCTTA TTATTTATTT 
    ATTTTTCGGT TAATTCTGTT TGTTTGTGAC ATTTTAGTTA TAAAATTGTT 
    TGTCATTTGT TTTTTAAGTT TTAACAATAT GTTTCTCTTT GTTGCCGTAT 
    CCATTATAGA GAAAATAAGC TAAGAATATT TTAGGGATTT CTACAAAAAA 
    AAATCCTCCA AATCCTTATT TTCTTGTAAC TTTACTTTCC ATTTTGATAT 
    TTTTTATATC AATCATGTGA TATAAAAAAT AATNCNTANT ATAACTCTCA 
    TACNTATCTC AAAAAAAAAA ANGGNCTTTT TTNANAAATT TGGNNTNTCC 
    CCCATAAAAA AATTCCNATT AANTTTNTTT TTTNTNAAAT TTTTACAAAA 
    NTTNAGGGTT ACCCCCNNNN NTTTNNGATT NNACCCTNNA ATNGGNNTTT 
    TTAAAAAATA AAANAAAATN GNNCCNCAGN TT

AT1G47056.1

Model type
Protein coding
Short Description
VIER F-box proteine 1
Curator Summary
Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB2,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.
Computational Description
VIER F-box proteine 1 (VFB1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: stomatal complex, sepal, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: VIER F-box proteine 3 (TAIR:AT4G07400.1); Has 4631 Blast hits to 2722 proteins in 229 species: Archae - 0; Bacteria - 68; Metazoa - 1574; Fungi - 394; Plants - 2158; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).
Link
InterPro Scan - TAIR