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11-0399-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 215254 [Map]; Strand: c
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: -782; Region: promoter
    Flanking Genome Sequence: 11-0399-1 - 5-prime edge 
    AATACTCTCT AGCATAGAAA CAGTAATGAA AACGCGGAAG CCAAACGTTT 
    CAGAAACGAG AATCCTTTTT TTCCACTTTT TGTGGTCATC ATTGGAAGCC 
    TAAATTTTTT GTCGAGAAAT GAAGATTTTT CCAAAGGGAA GAATGTCGTG 
    ATTTATAGTT AGTGACACTT GCAAGTTGCA ATTTTTGTAA TTTTCGTCGT 
    AGTTTACAAA CTATTTGATC TTCGAAATCT CACTACTTGA GTTTTATTCG 
    TGTAGAGTTT TAACTTATAT AAGTAGCACA CTAAATACAA AGATATAAAT 
    CACAGAAAAC GATTAGACAT AAGATAAAGA CAGTTATAAA AGGGCCAAAT 
    TTAAGGAGGA ACAAAATGAT GAGAAATAAC AAAACTTTCA AATTTCAACA 
    ACATGTATCG AAACGAGTCA CTGAAAAATT ATTATTCCAC CAAGAAACCC 
    ACTAGCTGAC TCANAGACTT CCTTTGCATT TTACTCGTGC AATGTACCAA 
    GGATGTCCTC GTCCCGAAAC AGATGATACC TACGTCAAAA ATCACCNACA 
    CNTCGATTTA ANAATTTTAC ACANCTATAN GGGGGTTTTT AAATNAAATC 
    AATANTNTTG GGGGNGATNA NTGAAANTNT TTTANAATNA AGGATANNNN 
    NCNGGGCCGN NNNNCCNNCC NGCCCCNNNN NNNGGGGGNN GNNNTNNNAN 
    NCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 215370 [Map]; Strand: c
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: -898; Region: promoter
    Flanking Genome Sequence: 11-0399-1 - 3-prime edge 
    AGAGTATTAG TGCCTTGTTG TCATGGTCAT ATATCTCAAT TGAAAATCTC 
    CTAAAACTAT ATATTAAATG ACATATAGTA TTTTACTAAA TTTAGGAATC 
    TTTTCATTTA TATAGTAAAA AAATAAAATA GTGTCGCTGT TGCCAACCAC 
    TCTCTATCCA TCTCAGTTTG CACATGCAAC ACAACCACAT GCTAATTGCT 
    AGTGAAACTC TCATACTGTT TAATTAACTC CCTAAATATT TATCAAACAA 
    ATGATATCTA CGTTTAAAAA AAAAAANCNT NTNTTTAAAT TNTANAGTTN 
    TNCAATANTT NCCNNNTNCN NAAGCTNCCA NCCNGGGCCG NNANCCNCCC 
    GNGCCCNTNA AAAA

AT2G01470.1

Model type
Protein coding
Short Description
SEC12P-like 2 protein
Curator Summary
Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.
Computational Description
SEC12P-like 2 protein (STL2P); FUNCTIONS IN: nucleotide binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50550.1); Has 6374 Blast hits to 3814 proteins in 364 species: Archae - 22; Bacteria - 2789; Metazoa - 1016; Fungi - 1422; Plants - 400; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR