1. Home
  2. Mutant Lines
  3. 11-0407-1

11-0407-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 427663 [Map]; Strand: w
      • AT2G01930.2 - [+] show detail - basic pentacysteine1
        Distance: 0; Region: exon1 (CDS)
      • AT2G01930.1 - [+] show detail - basic pentacysteine1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0407-1 - 5-prime edge 
    CCGGTAACAT TGTTGAGGAG TTCCAGTACA AGTGCAAACC GGTACAGGTA 
    AACCAGAAAT ATCCATACTC ACACCGTTAA TCACAAGATC AACACTCTTC 
    TTAACCGGTT TCACACAGCN TGCTTCTGCT GCTGCTGCTG AACATTGTTG 
    TTAGTAACAT CTCTCTCCCC TTTCGGTTTA CGCATCTTCT TAGCTTTCGG 
    TACCGTTGGT GTTGCGATGC TGCCTCTCAT CTTTCTCTTC TTACCAGTCT 
    GCTCTTCACA AGGAGCAGCA GGAGGAATCG GATTCTCCTC AAACCGGGAT 
    GAATT

AT2G01930.1

Model type
Protein coding
Short Description
basic pentacysteine1
Curator Summary
BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.
Computational Description
basic pentacysteine1 (BPC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 2 (TAIR:AT1G14685.1); Has 220 Blast hits to 218 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01930.2

Model type
Protein coding
Short Description
basic pentacysteine1
Curator Summary
BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.
Computational Description
basic pentacysteine1 (BPC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 2 (TAIR:AT1G14685.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR