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11-0411-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29601892 [Map]; Strand: c
      • AT1G78710.2 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
        Distance: 0; Region: intron1 (CDS)
      • AT1G78710.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
        Distance: -816; Region: promoter
    Flanking Genome Sequence: 11-0411-1 - 5-prime edge 
    ATAAACAGAG ACTCCTCTGT CACTGCAAAA ACCTTCCTTA TTTCGTCGTG 
    TTGAAGCGTT TTTTGTTGAC TAATAACCAT GATAATGCTA TAAAACAATA 
    ACATAATTTC CTTCGTTGAC TATAAGTGTT AACATAAACC GTCTAATTAT 
    AACCACTCAA ACCGGGGTTT TACGTTAGCT GTTAAACCGG GAAGGTTAGG 
    AAACGAGACA GTGAAACATA GGCAGTGATA GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29602008 [Map]; Strand: c
      • AT1G78710.2 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
        Distance: 0; Region: intron1 (CDS)
      • AT1G78710.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
        Distance: -700; Region: promoter
    Flanking Genome Sequence: 11-0411-1 - 3-prime edge 
    CTGTTTATAA CGGCTAGAGA TTCCATATTC TGACATGGGC TCGATTTTGT 
    TCGTCTTTGG TCCTTACGAC TTTTTTTTTG TAATTCACAA AGGAAGGNGG 
    ATGACGAAAG TGTATCCATA TTCGCTATAA TCATCACATG GAANACAACA 
    CAAAGCT

AT1G78710.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 42
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 42 (TBL42); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT2G31110.2); Has 1333 Blast hits to 1315 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1331; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78710.2

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 42
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 42; INVOLVED IN: biological_process unknown; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 43 (TAIR:AT2G30900.1); Has 1785 Blast hits to 1336 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1785; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR