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11-0416-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 766651 [Map]; Strand: w
      • AT4G01770.1 - [+] show detail - rhamnogalacturonan xylosyltransferase 1
        Distance: 0; Region: exon4 (3UTR)
      • AT4G01780.1 - [+] show detail - XH/XS domain-containing protein
        Distance: -659; Region: promoter
    Flanking Genome Sequence: 11-0416-2 - 3-prime edge 
    GCGNGACCCG GCNGNTCGGG TNNCNANCCN NNGNCGTCTA NCANTCGTGA 
    TCCNNAAAAT TGTAAGGAAT TTACTCAGTG AATCTATCTT TCTTTAGCTA 
    TTCGAGTTTA CTCTAATTTC CCTAATGGAG ACTCAAGAGC GTGATCATCG 
    ACAAGCCATA GACCGTAATC TTGGAAACGT TTCATTTTCC TGTCGTAACC 
    GATAATGTAG TTATTGTGGA CTATGACATG TTTCCCCTTT GTCTCTTGAA 
    CCCATGCCTC GTTCTTGAAG TACAATCCTC CTGTTGGGAA AGCTACTTGA 
    GAAAGCAAGT AGAGATCCAC CTGCAGAACA AAAGATCACA AAACAAGTCA 
    AAGTTACCAA AGAGACTAAA AGAAAAACCA TAAATCCAAC ATTAATAAGT 
    AGATAAAGTA GAAATAGAAC ATGAAGGAAA CAAAAACATA CTTGATGAGC 
    TGTTTTGTTA AGTGCCAAGT TAAAAGCAGG CTGATCATTT GCTTTAAAAC 
    GGATGGATTC AGACCAAGCT

AT4G01770.1

Model type
Protein coding
Short Description
rhamnogalacturonan xylosyltransferase 1
Curator Summary
Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the O-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT1 protein might be involved in the synthesis of the α-D-Xyl-(1,3)-α-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.
Computational Description
rhamnogalacturonan xylosyltransferase 1 (RGXT1); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: rhamnogalacturonan xylosyltransferase 2 (TAIR:AT4G01750.1); Has 292 Blast hits to 289 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01780.1

Model type
Protein coding
Short Description
XH/XS domain-containing protein
Computational Description
XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G48670.2); Has 3523 Blast hits to 2927 proteins in 400 species: Archae - 106; Bacteria - 327; Metazoa - 1271; Fungi - 161; Plants - 347; Viruses - 11; Other Eukaryotes - 1300 (source: NCBI BLink).
Link
InterPro Scan - TAIR