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11-0425-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30054333 [Map]; Strand: w
      • AT1G79900.1 - [+] show detail - Mitochondrial substrate carrier family protein
        Distance: -397; Region: promoter
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: -551; Region: promoter
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: -551; Region: promoter
    Flanking Genome Sequence: 11-0425-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTATAGGGGG 
    TTTATATGTC TCTGATGAGT ACAACAAAAT CTGAATATGG TTGATGAGCT
    TGAATTATAT ATTGTCTTAA TTCCTTCGAA AACATAAGTA AATCATTTGG
    TAACTTGACG TCTCTCTACT CAACCTTTTT TTTTGTTGGC NGTTCTTGTC
    TCTTTGTATA NAAAAAGATG TTCATATGTT TGTGTACTCT ACGTTACTTC
    TTCTTCTTCT TCATGTGACG ATGATGGGGA TTACGTGCAC CCCTTCTTCC
    TTAAACAAAA TCCATTAGGG AGTTACCTTT TTGTTTTGAT AGTGTAGTTG
    TAGNGGANCA CTGANAGTTA TCAAATGAAT GAGGATCTCT TGAATAATAA
    ANAATTGGAG TGTGGAATTA GGATGGATCT AATTTCATTA ATTAAAGAGG
    AGCATGATTA TCATTTTTTG TTAATTTAAT TTAATAATGG TTAATGTGAA
    AAACAGAGGA AACTAGAANA AGAGAGTTTT GGCAGGANAT GTAGGTGGCG
    GGAGTGGGTT GGGCNAAANA NATNATGGTG ACGGTGCACC TCCAAATTTT
    CTCTAATCTT TTGACACTTT TCTATAAAAC TCCCCAAACC TGATTCTCTC
    TGACTGCCTC ATAANTCATT ATAATAGTTN CCCCCGGATN GNTTTTTCTT
    CTTTTGGCNA ATNATAANCG GGTTCTTNTA TCCAAAAAGA AAACCAAAAA
    AAANGNNGGN CNACCTTCNG NCCANNCNNT CCNNGGTTTG GT

AT1G79900.1

Model type
Protein coding
Short Description
Mitochondrial substrate carrier family protein
Curator Summary
encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol
Computational Description
BAC2; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G46800.1); Has 25782 Blast hits to 14100 proteins in 457 species: Archae - 0; Bacteria - 6; Metazoa - 10775; Fungi - 7497; Plants - 4679; Viruses - 6; Other Eukaryotes - 2819 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.2

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G52315.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR