1. Home
  2. Mutant Lines
  3. 11-0430-1

11-0430-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12266515 [Map]; Strand: w
      • AT4G23500.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-0430-1 - 5-prime edge 
    GCCGTGATCG CTCTCGGCAG TGAAATGTCC GGTGGAATTG AAGATGTTCG 
    AGCTGAAGAT ATTGTCGCCA TTAACTCTGA ATCTGGAATC AGGTATGTAA 
    CCACCAAATT CACACAAATC AACCGGTTTA AATTCGATTT GATTAACCGG 
    ATACCGATAA TTCTGCAGGA TTAAAACAGC TATTGGTCGA GGAGGATACG 
    TGAAGGATGT ATACGTAAGA GGAATGACAA TGATGACAAT GAAATATGTG 
    TTTTGGATGA CCGGAAGTTA CGGTTCTCAC CCTGATGAGC ATTATGATCC 
    GAAGGCGTTA CCGGTGATTC AGAACATTAA TTATCAAGAC ATGGTCGCCG 
    AGAACGTGAC CATGCCTGCT CAGTTAGCTG GAATATCGGG AGATCAGTTT 
    ACTGGAATCT GTATCTCTAA CGTGACGATC ACTCTATCGA AGAAACCTAA 
    GAAAGTGCTT TGGAATTGTA CTGATGTTTC GGGTTATACT AGTGGTGTGA 
    CTCCGCAGCC GTGTCAGTTG TTGCCGGANA AGCACCGGGG GACGGTTGTG 
    CCGTGTAATT TCCCGGAAGA TCCGATTCCT ATTGATGAAG TGAAGCTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12266399 [Map]; Strand: w
      • AT4G23500.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-0430-1 - 3-prime edge 
    ATCACGGCAC TATCAGGAGA AATGCATGTG AGCCGTCGGA TCAAGAGCTG 
    TTTCGTAGGC ATGCCGTAGT TGATTCCGTA CTGATCCCAT CCACTTTTCA 
    CGGCGATACA ATCGTCGCCG GAAACTATGT AGCAGTCCTC AATCCTCGTG 
    TTGGTACAAG AATCTGTAAT AAACCGGAAA TAATTTCAGC TAAATCTTAA 
    AAAACCGGTT ATTGGAATTT TAAGATTTTA TCGGTATGAT TTCGTTATCG 
    TACCTGGGTT GATACCGTCA GTGTTTGGTA CCGTGACCGG TGCTAAGATC 
    GTCAAACCTT GGATGTATAT ATTGCTGCAT TTTCGTAAGA AATAAACAAA 
    ACCGGTTTAA TAGGTTAAAA TTTGATAACC GAATGGTTAA ACCGGTTGAG 
    ATTAATTTAC CTGCTGTAGA CCGGGTGAAT ATGCCAAGAA GGAGAATT

AT4G23500.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G61490.3); Has 4172 Blast hits to 4159 proteins in 509 species: Archae - 6; Bacteria - 1479; Metazoa - 14; Fungi - 1128; Plants - 1399; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Link
InterPro Scan - TAIR