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11-0444-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23411825 [Map]; Strand: c
      • AT3G63390.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
      • AT3G63400.1 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -199; Region: promoter
      • AT3G63400.2 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -199; Region: promoter
      • AT3G63400.3 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -199; Region: promoter
    Flanking Genome Sequence: 11-0444-1 - 5-prime edge 
    GTTCGACCGT CCGATTCCGC TGCTCCGGGG ACCTGTACCC TCCGGTGGTT 
    CTTATGTTCT AGCTTTCCGA TCACTGGATT CATGGTCAGC CGCTTTCAAG 
    CGTTGCGAAA CCCTAATCAA GGACCAGTGC GAGGAAGGTG CTAAAATTGG 
    GTGCGCCGTC TCCGCCTCCA ACAACTGTAA GCCGCCGTGG TGGCGGGGAT 
    CTGGTGGTGA CATGAGGGAA CGAGAGAAGT GCGAAGAGCG GGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23411941 [Map]; Strand: c
      • AT3G63390.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
      • AT3G63400.1 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -83; Region: promoter
      • AT3G63400.2 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -83; Region: promoter
      • AT3G63400.3 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -83; Region: promoter
    Flanking Genome Sequence: 11-0444-1 - 3-prime edge 
    GGTCGAACAC AACGGTAGTC GCAGCCGCCG AGAAATCATC GTCATCTTCC 
    ATCATTTCAA TTTCTCTTCA AAGGCCCATC GGGCTTTTGA TTGAGGCCAT 
    CCACCTATAT TTATTTAATT AATTAAGTTT GGGGGATC

AT3G63390.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63400.1

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 55912 Blast hits to 37431 proteins in 3034 species: Archae - 126; Bacteria - 11048; Metazoa - 23197; Fungi - 5408; Plants - 3603; Viruses - 370; Other Eukaryotes - 12160 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63400.2

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 48708 Blast hits to 30392 proteins in 2888 species: Archae - 119; Bacteria - 11731; Metazoa - 17613; Fungi - 3792; Plants - 2731; Viruses - 247; Other Eukaryotes - 12475 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63400.3

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1).
Link
InterPro Scan - TAIR