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11-0446-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 93049 [Map]; Strand: w
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -874; Region: promoter
    Flanking Genome Sequence: 11-0446-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATAGCCC 
    ATAGGGCTAA ACTTCATTTC GGCAATTCAA GAAACGCTCT GATTACACCG 
    TACCTTCAAT TACTCCAAAT ATCTTACAAG CATGCTTTGA CTTTGTGAGC 
    CTCGATTGGA ACTGATTGTT CAACCAATAG TCGTGTTTTA CAGTGTCTCA 
    TCAAGGTTTG GTTTACGTCN ACCCTTCATA GCCGCTGGCA CTATCCTCCT 
    CTCACCATTG TGGTACTACT TATCGGCTAT GCAATCGACG TTGGGGTTTT 
    GATTGGTGAT TATTGTCCAA TCCATATGTA TTTTACTCAT TGGTTTATGT 
    AGCTTAGTCC TTAGACATCG CTAAGATCAT GTTCAAGGTC CGTGTAGGGC 
    CTTCTAGTTG ATGTAGAGGC GGGAAATGCT AAGAGAACAC AAGTTGAAAA 
    CCAGCTTTTA TAAAAATGGT GAAAAAAAAG ACAAAATTGG CTCAAATTCT 
    CTAGTAAATT AGGAAGATTG TTAAATCAAA TGCATGCTTC GAAGATGTTG 
    TTAAAATAGT GTGGACTACA AAGCAAACCA GAGTATCAAA CTCAATTGAG 
    TCGGGTTTAA GTAATATTTT GGGCTGCTTG ATATAAGAAA AAAAACTTTA 
    TTGAACCCAT TTAAGGCCCA ATATAAGTGA TAGGGAAAAT GANAAATGAG 
    ACCTCATTGG GTTCGTGTCT CGCGCCANAA TCAAGCCTCC TTACCCTCAA 
    AATTTCCACC CAAGTTTGNG GANA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 93117 [Map]; Strand: w
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -806; Region: promoter
    Flanking Genome Sequence: 11-0446-1 - 5-prime edge 
    GCCTATGGCT ATAGAAGCAA TAAGCCATTT TTATATTCAT AACTTTAGAG 
    GTATTAATAA GAAACATATA TAATTTTTTT ATATAAATGT ATTGACAAAA 
    AATCAAGTAA AAATAAGCAA GATGCAAAAC ATAAGCAACA TTTCTAATTA 
    ATATTATATA ATTTTTTATA ATGATTTTAC ACATGAAAAA ATCTCTAATT 
    AATAGATATG ACACATGTGC GATCATGTGA GTTATCAATT TTGAATAGTT 
    TTTTAATACT AAATTGACAT ATTGTTTGAT CAGAAAATGT CATTTTTTGA 
    AACTAAGTGA ATGAATAAAG GGTTGAGCTA AGCAATATAT AATTGTTGAT 
    GATGAAATAA TAACATGAAT ACAAATTATA TTTATATGTG TGTATCAATT 
    AGTGTAATAT TTAAGAGAGA ACCATTGGAG TAGAGCCTTA CAAGACAATA 
    TATGATCACC ATTGGAAAAC TTTAAAGCTA TTACTATGGT AAAAACTCAA 
    TTGCTTGAAT T

AT4G00225.1

Model type
Pseudogene
Computational Description
pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}
Link
InterPro Scan - TAIR

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR