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Mutant Lines
11-0449-1

11-0449-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 3503425 [Map]; Strand: w
- AT1G10590.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G10590.2 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G10590.3 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
  Distance: -10; Region: promoter
- AT1G10600.2 - [+] show detail - associated molecule with the SH3 domain of STAM 2
  Distance: -279; Region: promoter
- AT1G10600.3 - [+] show detail - associated molecule with the SH3 domain of STAM 2
  Distance: -279; Region: promoter
- AT1G10600.1 - [+] show detail - associated molecule with the SH3 domain of STAM 2
  Distance: -299; Region: promoter

GTTTTTGGAA ACTCACGTAC TTTTTGATTT TGAGAGAAGA GACGACGACG 
ATGACTTTAG CAGATTAGAT CTGTGGAGGC GATATACACA AAGACGCGGC 
GGTCTTCTTT ATAACTCTAG AACTCAGATA TTAATACTCA CCGTAGATCC 
GTGACCTCAA CACGTGTCAT GTTTCTGAAA CATCTTCATT AAAACTACCC 
TTATATTTTT TTATATATTT AAGATTGACC TTATAACTTT GACTAATACT 
GATTACACCC TCTATTCTCC GAATCGGTTA TCAAAACCAA TTTCACTGGA 
CCGTGATATC AGAAACCGGT TCACTGAGGT GGGCGAGATT TTTTGTTGTC 
ACTCTCCTCT CCTCGTTCTT CGATGCTCAT CCATTAGAGG AGGAGCCGAT 
GTTTCTGCTT CCATGGTAAC GCTCTCGTCT CCATCTCCCT CGCTCTCTTG 
CGTAGAGAAC GTGACATGTA AATCTTCTCA CGTTTCTCGG GTTCTAATCT 
CCGGTACCGA TAATATTAAT CACGGTGAAT CGTCGGAAGC CAAAATACTG 
AGAGATGTTC ATATCGTAAG AACTTTGAGA TTTTTCTTTG AATCTCAGTT 
CTCTGTGATT TGGTACGTTC AATTACGGAT ATCTAATTTG AGTTAATCGT 
TGTTGTGTTT GTGCTTCTTA GTCAGAAAGG GTATTG

AT1G10590.1

Model type: Protein coding
Short Description: Nucleic acid-binding, OB-fold-like protein
Computational Description: Nucleic acid-binding, OB-fold-like protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G23750.1); Has 250 Blast hits to 250 proteins in 60 species: Archae - 55; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G10590.2

Model type: Protein coding
Short Description: Nucleic acid-binding, OB-fold-like protein
Computational Description: Nucleic acid-binding, OB-fold-like protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G23750.1); Has 250 Blast hits to 250 proteins in 60 species: Archae - 55; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G10590.3

Model type: Protein coding
Short Description: Nucleic acid-binding, OB-fold-like protein
Computational Description: Nucleic acid-binding, OB-fold-like protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G23750.1); Has 250 Blast hits to 250 proteins in 60 species: Archae - 55; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G10600.1

Model type: Protein coding
Short Description: associated molecule with the SH3 domain of STAM 2
Computational Description: associated molecule with the SH3 domain of STAM 2 (AMSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 1093 Blast hits to 1091 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 313; Plants - 274; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G10600.2

Model type: Protein coding
Short Description: associated molecule with the SH3 domain of STAM 2
Computational Description: associated molecule with the SH3 domain of STAM 2 (AMSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G10600.3

Model type: Protein coding
Short Description: associated molecule with the SH3 domain of STAM 2
Computational Description: associated molecule with the SH3 domain of STAM 2 (AMSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 1117 Blast hits to 1115 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 409; Fungi - 306; Plants - 280; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link: InterPro Scan - TAIR