1. Home
  2. Mutant Lines
  3. 11-0450-1

11-0450-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9731526 [Map]; Strand: w
      • AT4G17440.2 - [+] show detail - Protein of unknown function (DUF1639)
        Distance: 2274; Region: intergenic
      • AT4G17450.1 - [+] show detail - transposable element gene
        Distance: 1291; Region: intergenic
    Flanking Genome Sequence: 11-0450-1 - 5-prime edge
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAA GCCACATTCT TCTAATGAGA GAGTTGGCTA
    CTTCTTCCTA TTTTACTCAA CCAAATAAAA TTATAGAAGT TTGACCATTG
    ACTGAGGACA ACCAAGAGAA CATAGGAATA TTTTGACCAA GAATGCACNG
    TGTGGGTGGA CAAGAGCACA CGTGTGCTTC GCTGTCATGG GTGGTGTGGT
    TCTCTTAGGA ATGTGTGCGC CACGTCGGTT CCACATGGGA GGATATATCG
    CACGAGCCAA CTTGGTCCTT TCTTCTTCTT TTTTTTTTTT TNAANNAAAA
    ANNTTNCTTT NAANTTANNA CCCGGGNNNG GNANCCNCCC NNCCCTTNNN
    AAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9731472 [Map]; Strand: w
      • AT4G17440.2 - [+] show detail - Protein of unknown function (DUF1639)
        Distance: 2220; Region: intergenic
      • AT4G17450.1 - [+] show detail - transposable element gene
        Distance: 1345; Region: intergenic
    Flanking Genome Sequence: 11-0450-1 - 3-prime edge
    CAAGTCTCTT TGGGATTTTC AAAGATGGCT TATCAGTTTC AGATGCTATA 
    ATTTAGTTCT TTTTACTAAT TGGCTTCAGG TTCAGCCCCT TGGACAGGTT
    GATAAGCCAC TAATATTACT AATATGTCCA TTCAGAAATC TCGAATAATG
    AAACCAACTA ATATTTCTCT CAATTTCGTT CGTTTTGGAT CTATAAGATT
    TGAATATTGG CTTGGCCATA AAAGTGGAAT ATTTTTGAAA CATGTTCTCC
    AAAAACATAT GGTTTCCTAG TTACATATTT GAATT

AT4G17440.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1639)
Computational Description
Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT3G60410.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17450.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.4e-306 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR