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11-0468-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1238853 [Map]; Strand: w
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0468-1 - 5-prime edge 
    NNGGTNATAC TNGGGACGAN GGTACGCANC AGGATCACCN GCCCNGGCCG 
    GGGGANGAAN GAGNNCANGA CGGAAAACTC CGACGACGAA AAAGCATANC 
    CGCCGTCACA CAGATGGAGG TAATGGACTT TTCTCGTGTT TTAGTAAGAT 
    TTGTGGTGTG GAATGCAGTT TCGTATGCGG TGGTGGTGGT GGGCCGATGG 
    TCTCAGAAGG ATCTACTAAG AAAGGTGGAG CCGGACGTGT GCAACGCACA 
    TATTCCGCTG ACGATCTGAG CTTTGTGTGA TCTTTATTTT ATTGGTCTTA 
    TATTAACTTT TATTTTTTTT GGAAAACTAT ATTTTTTAAG GATCTGATCT 
    GATGAATTAA TCAAATAGNA AACAAAAATT AATTTATTAA TGTTGNGTTA 
    ATAAATCATT NATTTTNGGG NATTCCTCTT CTTCTTCCTT ATTTTTAAAA 
    AATTACCANC CCGGGCCGGN NACCNCNCGT GCCCNNATAN NGAAGNNGNA 
    ANNNANNNNN NNGNGGCGNN GNAANGGGTC GNNCNNNNNN NNANNNTGNN 
    NNAGTNNNNT GNNNNCNNAN NNNNNNNNCN AAGGGNATAN GTNNANNNGA 
    GNGNAGNNGN GAANNANNAN TNNNANTCNN NNNANATNNT ANGANNNCAN 
    GNANGAGGNT TGNNTNNANN CNCNAAAAAN GNNANGNNNN NANGNNANGG 
    ANATNGANNN ACAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1238739 [Map]; Strand: w
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0468-1 - 3-prime edge 
    GCTACTTATA TGGCTTGATC CTATGTCGTA CAACGGTGGA AGCTCTGTTC 
    GCCATCTCTC GAGTTTTGAT CGCAATCCTT CGATGCTAGA TTCATCGATG 
    CTCCATTCGC TGAGTATTGA ACTTTCCGTT TCGTGCGATC TATCTTTCGC 
    CAATTTGTCA GCCACTTCAG ATGGCGATGG TCCTAACTCC GATTCAGTTA 
    AGATTCGTCT TCCAGCTAAA TTCCTCACTG GTGTACCAAA ATCGTGATGA 
    GTTCTCATCG GTGTAGCCAT GTAGTTTGAT CGGATCGGGG TTGATCCGAC 
    GATGTTTGAT CTCATTGGAG TCGAACCAAC CATGTTAGAC CGCATAGGAG 
    TTCGCATTGG AGTCGATCCA ACCATGTTGG GATGCATCGG TGACATTGCG 
    ATGATGTTGG ATCTCATAGG AGTTGATCCA ACTCCGTTAG ATCTCATCGG 
    AGTAGATGCG ATGATGTTTG ATCTCAATGG TGTTCCGTGC TTCGATAAGT 
    ACGGGGAAGC TCGGCCACGA TCGTAAGCT

AT1G04540.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link
InterPro Scan - TAIR