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11-0472-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3532355 [Map]; Strand: w
      • AT5G11100.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -47; Region: promoter
    Flanking Genome Sequence: 11-0472-1 - 5-prime edge
    CGNTGATNAA CTAACAAAAT CGGCNTATNC GANAACANGT NAGGACCCGG 
    ATTCTNCNAT CCTACTTGNN TCACCTGGGA ANGCNAGGAG NCCANGNCAA
    NTANACCACG CANTNCCCTG CNNNGGNCGT CNACNACNNN TGATCTNTAG
    GGGNNGGCCG NCAACGAATC CATCANNNAG CTAAGTCANG ATNNGCAGGA
    ATCANTTCGG CTGGCCCNAA CCGAACAGGA TCACCAGANN NGGCCGTNTA
    GCGANCAAGC CNTATAAGAA GATTAATAAA TAAGAAGAAC AATTTTTTGG
    TTTTGAATAG GCAAAGACCA TTGCTGCATT TGCAAGAATG ACAGTTCAAG
    ATTCGAGAAA ACTTCTCCCG GGAGATTTTT ATCCTTCTTG GGTTGTGTTT
    TCTCAGAGAC AAAAGTTGAG TTATTCTAAA TGTCTNGNAC TTTCATCATT
    NNGTTCTGTC TTTTGCTCTT GTTGATGNAN NGATACTTGA NCTTGATTAA
    ACTACAGTTA AATNGGNTNA ATNNTGAACT NGAAAAGATC TGGCCTTATG
    TNACATGAGG NNACTTTAAT TAACACGCAN TGGTACNTTN TNTATTTANC
    CTTNNGGGNT GGGNNGAGCA TANNNAACAT AAAGNNANAN AGCCGGANGG
    TGAANCNTGA ANNNNAAGCG NCNGNNNTTA NATNGANANG GAGGTGGAGA
    ANCNAGNGAC GTTGNACNTN NNCAACNGNN NCNGNNAGAN GNNTCCNTAA
    NGGTNCGNGG AANGAGGAAC NNTNGGGCAN ANGGNANNNA NGNTTNANCN
    GNNAANANGG TGTAGANGGG ANNAAAAAAN NCAG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3532324 [Map]; Strand: w
      • AT5G11100.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -78; Region: promoter
    Flanking Genome Sequence: 11-0472-1 - 3-prime edge
    GAACCAGGGA CGAGAGACAC GGTGATTTTT TAGATGAGAT CCATTCATCG 
    GAACAGAGAG TGCTCTGCTT CGAGATTAAT TAGTAATTCG ACAATAAAGG
    CTAAAGACGA GATTGCTTCA AGCT

AT5G11100.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR