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11-0477-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 930492 [Map]; Strand: c
      • AT4G02100.1 - [+] show detail - Heat shock protein DnaJ with tetratricopeptide repeat
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0477-1 - 5-prime edge
    ATCCTGAAGC ATATCGGCGA CGTCTTTGTA TCGACGGAGG TAAAGAAGGG 
    ATCTGGCTTT GAGTTCGAGA GCGAGTTCGT AACGAGGAGA TACAGAGAGT
    GCAGATTCCA GAAGATTTAG AGCTGATTTC ACGTCGTTTG GATCTTGACT
    CGCTATTAAA CTCTTTGCTT CTTTCATGTA TTTATCAACG ATCTATGAGA
    GAGAGAGAGA TAAAAAACAA CATAATTTGA TGAGATCGAA TCGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 930608 [Map]; Strand: c
      • AT4G02100.1 - [+] show detail - Heat shock protein DnaJ with tetratricopeptide repeat
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0477-1 - 3-prime edge
    TTCAGGATTA CATTCCTAGT CTTAAATTAG CCGGCGGCGG CGAAGATTCC 
    GGTATCGGTT CATCTGAGCT TTCTTTTACT CATTCTTCTC GTGAATCTGT
    CAAACTTCTC AACGATTTGC CTAGTCATCA TCACCATGAC TCGTCTTTTA
    AATGCNTTCT CTGTCTCTGA TTTGAAGAAG AAAGTCATGG CTGGTCTCAC
    TAAAAACTGC GACGAACAAG GGCAATGGAG GTCATTTACT ATACCAAAAA
    AAACATTTCT GATTTTCACC CGACCCGGAT TTTTGATTCG GATCTTTTTC
    TTCTTTCTGT TACAGATATT TGGTTTTGGG TCAAGCT

AT4G02100.1

Model type
Protein coding
Short Description
Heat shock protein DnaJ with tetratricopeptide repeat
Computational Description
Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G47440.1); Has 318 Blast hits to 309 proteins in 95 species: Archae - 0; Bacteria - 4; Metazoa - 68; Fungi - 63; Plants - 160; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR