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11-0480-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 794397 [Map]; Strand: c
      • AT4G01840.1 - [+] show detail - Ca2+ activated outward rectifying K+ channel 5
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0480-1 - 3-prime edge 
    GTGGCGCGTG CGTTTTTGTA TTTGGCGGAA GCGAGAATTG ATCGCCGGCA 
    TCGGAAAGCT GTTAAATTGG CGTTGAATAG AGAAATCACT GTTGATGATT 
    TGCTCAAAGC TGATACTTAT CAACATGGTT TCATCAGGTT AACATCTTTT 
    AAAAACCTCA ACTTTGTTTT TTTTTTTAAA ATNTNGGATT AATTGCTTAA 
    AAANNAAANN GATTTGANCT GATTNTNANA AAGGGTTTTN TNCNATTTGN 
    GNNAANTTTA GGNCAAANAA GTTGCAAAAA GNGTTAANCT NCCACCCCGG 
    GCCGTNAACC NCCCGNGCCC CTNNAAAAAA AANNNGNNNN NNC

AT4G01840.1

Model type
Protein coding
Short Description
Ca2+ activated outward rectifying K+ channel 5
Curator Summary
Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.
Computational Description
Ca2+ activated outward rectifying K+ channel 5 (KCO5); FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: Ca2+ activated outward rectifying K+ channel 6 (TAIR:AT4G18160.1); Has 4836 Blast hits to 4447 proteins in 1041 species: Archae - 139; Bacteria - 2196; Metazoa - 1258; Fungi - 189; Plants - 266; Viruses - 0; Other Eukaryotes - 788 (source: NCBI BLink).
Link
InterPro Scan - TAIR