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11-0515-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19644420 [Map]; Strand: c
      • AT2G48020.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon2 (5UTR)
      • AT2G48020.2 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0515-1 - 5-prime edge
    CNTGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCT CCCTTGAGCA CTTGGCTAAC TCAAAAATTG
    CAAAAGAGAC GAAGCCTGAA GCAAAAGTTG AGTAAGAAGA CAGAAACATA
    CAAGAAGAGT AAAATGGAAA AGCGGAGGAC AAGAATTAAA GGTGAAAACT
    TTTTATGGGT AAGAGTGACC CTTTAGGCAA GAAATCCTTT GTGGGGTTTG
    TTACCATTCA AGAGATGAAA GCTGTTTTAT GTCCTTTACC AAGAGCAGCC
    ATGGATTACA ATCCAAAAAT TTGATTTCAG ATTTTCTGAT GATAACCATT
    AAACTAGAAT ATAGCTAATG ACAACGTTGA GCCCACTCGG GGGAGTTCAA
    ACAAAAATGA GTTTATAAAC TACTTATCCA CTATGTGTAT ACTAAAAGAT
    ACACTAAGCA AATTCACATT TAAAAAAAAA AAAAAAAAAA NNTNTCCANN
    TAAANTTNAN TCCCCCCCCC CCNCCCTNTG GGNNGGNGGG GTTGGNNNAA
    AAANAAANCC GNNNNNTTTT GGCCCNTTTN NAAAANCCTN GATCTNNGNT
    TTTTTTTTNA AANTTTTGGG NANNCTTTTT TTTNTNNCCC NNNAAAANNA
    AAAANNCCCC CCNAACCNNT TNAAANAAAA NTTGNNTTTT TTTTNTTTTT
    TGTNCCNNNA AAAANNANNT NGNTNNNANA ANNTNGTNTT ANNNNNNNNC
    CTTTTTTTTT TAAAAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19644429 [Map]; Strand: c
      • AT2G48020.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon2 (5UTR)
      • AT2G48020.2 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0515-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAAATA 
    CATAATACCT GAAGATGTCC AAGGCAAGTG ATGCCGTCAG AGAACCATTG
    GTGGACAAGA ATATGGCTGG ATCAAAACCA GACCAGCCGT GGATGGTTTA
    TCTCAGCACA TTCGTTGCGG TCTGTGGTTC TTTTGCGTTC GGTTCTTGTG
    TAAGTGATTT TAGATTTATG GAAAGTCACT AACTTTGTTT CTGGTCTAAA
    AATGAACGTT ATACTAAAAC TTGGTTTCGT TGCAGGCGGG ATACTCTTCA
    CCTGCTCAGG CTGCAATTAG GAATGACCTT TCATTGACTA TAGCTGAGGT
    ACATAATCCT TCTAGGAAAG ATTGTTCATC ACTTATTCAT TGAATGTTGC
    TTACCTCTAG CTTGGATTCT GCAGTTTTCA CTCTTTGGTT CTTTACTAAC
    TTTTGGCGCA ATGATCGGTG CTATAACAAG CGGGCCTATA GCTGATTTAN
    TTGGAANAAA GGGGGTAAGG AAATGTTTGA AACTTTCCAT CTATTAGTTT
    TCTTTGTGNT GACAACCCCT NCTTACTTTN TGGTGGANCT NTNTCCANGC
    CAAAAAAAGN TNNCCNCTCC TTTNGNGTNN CNGGNGGGNG GCAGAAGTTT
    TTNCCGNGGN TTNCCCANNA ANANACCCCG GGCNNGNGNN ACACTNNCNN
    NANGGAGNAA AANAGNNGAA NGAANNAANT NATNCANGTN AGNNGNNNNN
    NNNNGNNNAN NCCGGNNNTN GANNA

AT2G48020.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G18840.1); Has 32576 Blast hits to 32035 proteins in 2204 species: Archae - 531; Bacteria - 16009; Metazoa - 5272; Fungi - 6662; Plants - 2708; Viruses - 2; Other Eukaryotes - 1392 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48020.2

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G18840.1); Has 32576 Blast hits to 32035 proteins in 2204 species: Archae - 531; Bacteria - 16009; Metazoa - 5272; Fungi - 6662; Plants - 2708; Viruses - 2; Other Eukaryotes - 1392 (source: NCBI BLink).
Link
InterPro Scan - TAIR