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11-0531-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1364708 [Map]; Strand: c
      • AT1G04840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0531-1 - 5-prime edge 
    GTCGCTGCTC AGCTCGTATC TTGCTCTTCG CTTCTCAAGT CCCCGGATTA 
    TAGCCTCTCG ATTTTCAGAA ATTCTGAAGA GAGGAATCCT TTTGTTTTAA 
    ATGCTTTGAT CCGTGGTTTG ACGGAGAATG CTCGTTTCGA GTCTTCGGTT 
    CGTCATTTCA TTCTCATGTT AAGGCTTGGT GTGAAACCCG ATCGGCTAAC 
    TTTTCCGTTT GTACTCAAGT CTAATTCTAA ATTAGGTTTT AGATGGTTGG 
    GTAGGGCTCT TCATGCCGCG ACTTTGAAGA ATTTCGTTGA CTGTGACTCC 
    TTCGTCAGGT TATCATTGGT TGATATGTAC GCCAAAACCG GACAATTAAA 
    ACATGCCTTC CAAGTGTTCG AAGAAAGTCC TGATAGAATC AAAAAGGAGA 
    GTATTTTGAT ATGGAATGTT TTGATTAATG GGTATTGTCG AGCCAAGGAT 
    ATGCATATGG CTACAACACT TTTTCGATCC ATGCCTGAGA GAAATTCAGG 
    ATCTTGGAGT ACTTTGATCA AGGGTTATGT TGATAGCGGC GAGTTGAACA 
    GAGCAAAGCA GCTTTTTGAA TTAATGCCAN ANAAAAATGT GGNGTCTNGG 
    ACAACATAAA TNAATGGGGN TTTTTCNAAC TGGCNACTAT NAAACTGCGA 
    NTTCTACCTT TTCNNNATGC TNNANAAGGG CTTAAGCCTA ANNAAAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1364824 [Map]; Strand: c
      • AT1G04840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0531-1 - 3-prime edge 
    GCAGCGACGC GGCTACTGAG GACGCCGCGA CGGAGGATCT GGGCGTGAAC 
    ATGGCGGAGA CTTGCGGTGT CTTTACAGGC GTGAATCAGA GATATGAAGT 
    GAGACTCGTC CGGTGAGGCT TGACGATCGG CCGGAAAATA GATTTTAGCN 
    GGGAGAAGAT TTCGGTTTAA AAAGAACAGA AAGCGATTTC ATCGTACCTC 
    AGTCAAAACG CTCATCAGTC ATCAGATCTC GCGGTGCAAA AGACTCTTAT 
    ATATTTGGCT AGTGGCTACT TATCTTAACC GGATTAAACC GTATTGCTCT 
    AAATATATCA AACCGGTTAA TTTGCGAACC GGTTCAGACG AAAGCAGTAT 
    GGAAATGTCA TTTTTTTTAC CTTAAAAGTT ACAATGCAAA CAACAAGACG 
    GATTAAACAG TAATGGAAGC TACCANCCCG GGCCGTNNAC CACCCNTGCC 
    NCTNNAA

AT1G04840.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G74630.1); Has 39151 Blast hits to 14409 proteins in 285 species: Archae - 0; Bacteria - 8; Metazoa - 167; Fungi - 139; Plants - 38292; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
Link
InterPro Scan - TAIR