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11-0536-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 916868 [Map]; Strand: w
      • AT1G03670.1 - [+] show detail - ankyrin repeat family protein
        Distance: -646; Region: promoter
      • AT1G03680.1 - [+] show detail - thioredoxin M-type 1
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 11-0536-1 - 5-prime edge
    CCTACGACCA GGCCTCTTCA AAGTTCTAAC CGTGTAAATT GGTAACAATA 
    ATAAAATGTT TTCGTAGACT TCAAATTCTG AAAACCTGAG ACATCATATT
    ATCATACAAG TCTAGATGAA CAGTGATGAG TAGATAGGTA AAAGGTAGAG
    AGTCGAGAGA TACAGAGAAA AGAGAACAGT GACTAGTAGT TCATTACAAG
    AATTTGTTGA TGCTGGTTGC TAAAGTGTCT TTAGAGACAG CACCGATGAT
    TGTATCCTTC TTCTCACCAT TGACAAAGAT CATGATAGTT GGGATGCTTC
    TAACACCATA CTGGCCAGGG GTTGCAGGAG ACTCATCAGT GTTAAGTTTG
    TAGAACTTGA ACTGGCCGGC GTACTTTTGC GCGAGTTCGT TGACAATGGG
    ATCAATCATT TTGCAGGGTC CACACCATGG TGCCCAAAAG TCGACAAACA
    CAGGCTCATC AGCCTTGAGA ACTAGAGAGT CCCATGTTGA ATCGTTGACC
    ACTGGAACTG CATGGATCAT ATAGCAAAAA AAAACCAAGA TTAATGACTC
    ACCATGAGTG TAGAATTATG AATGAAGGGA TAACAAATCC AACAAACAAG
    CATTTTGAGT TTCTATAGAT AGATACTTAN AGATCCTAAT ACATATGTGC
    NTAATAACAT GACCAAAGAG GTTCAAATNC CNAAAAACCT TTTTNTAGTT
    GGCTTCCAAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 916752 [Map]; Strand: w
      • AT1G03670.1 - [+] show detail - ankyrin repeat family protein
        Distance: -530; Region: promoter
    Flanking Genome Sequence: 11-0536-1 - 3-prime edge
    GTCGTAGGGG CTAAAATTCT AATCTCTAAC TAACAACATT GAATACAATT 
    GCAAAACTGA GATAAGGTCA GAGCATTTAC ACGCACAAAC TTACAAAACT
    TTGTGATGAC AAAAAGGTCT GATCTTTAGA AGAACCTTAA GGATACNTGT
    TCTAATGTCG GATTACCGAA AACATTGAAT AACATTGCGT AACTGAGACA
    AGGTCAAAGC ATTACACACA AACTTACAAA ACCTTGTGAT GATAAAAGTT
    TGATCTTTTG AACCTTACGG ATGTTGTTTA GAACTAGAAT AAAAGCGACG
    CTAATCCTCT TCACGTCATC AAGAGAATAT ATCTCTCACA TTTATATCTC
    TACATAACCT AAGAAGTAAT TCAATCTACC CAGTACTGCG CATAGATTCT
    CTCTCTGTTC GAATCTGTCT CTCTGCTTCA AGTAATTCTC ACTTTTTCTT
    ATGCTGCATT AATTTAAAGT TATTTAGGTG GATGTTTATG TCGTCTAATA
    TTCCTGAAGT TTTAGGATTA TCAAATCTTA CTTATTCTTT TTGATCAGGA
    GATTTTAAAG TGAAAGTAGC ACTGAACAAG AGTATGAAGT GTGACAGTAA
    ATCTGNAAAC AGTAAGCTCC CTCGTCCACA TNTGGCTCCC TTTTCNNATC
    CANATNANTG GACTATTTTN AAAGACAAGG ATGAATNTNA NATTNTGAAT
    CCNCCNATTT TGTGTGCTNG TANAACAAGN NACAA

AT1G03670.1

Model type
Protein coding
Short Description
ankyrin repeat family protein
Computational Description
ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03500.1); Has 38664 Blast hits to 17395 proteins in 690 species: Archae - 39; Bacteria - 2692; Metazoa - 19825; Fungi - 3120; Plants - 3302; Viruses - 203; Other Eukaryotes - 9483 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03680.1

Model type
Protein coding
Short Description
thioredoxin M-type 1
Curator Summary
encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.
Computational Description
thioredoxin M-type 1 (THM1); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, response to cold, positive regulation of catalytic activity; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G03520.1); Has 21675 Blast hits to 20380 proteins in 3008 species: Archae - 297; Bacteria - 11532; Metazoa - 2886; Fungi - 1120; Plants - 1860; Viruses - 8; Other Eukaryotes - 3972 (source: NCBI BLink).
Link
InterPro Scan - TAIR