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11-0543-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1373154 [Map]; Strand: w
      • AT1G04860.1 - [+] show detail - ubiquitin-specific protease 2
        Distance: -53; Region: promoter
    Flanking Genome Sequence: 11-0543-1 - 5-prime edge
    CTCCCAACAC AACTCTATCG ACCAAATATT TGGTTCGTAA ATATTAATAA 
    TTACTCCAAA ACAAATCTTT AAACATTTAG TTCGATATTA ATTAAACCAA
    AAAAATGTTT TTTTAGACTT TAACAAATAT TCTAAACCAC TTGAAAAATG
    TTCAAAAAAG TTAAACAATC TTCACAGAAA AAAAATCTCT TGAAAATTAA
    TACCTAAGAA ATTTTTGGAT GTTTAATCAA ATACCAAAAA TAATAAATTA
    TATCACCCAT ATAAAAATCT ATTGAAAATT GGTATAACAA TCTCGTTTAC
    ATAGAAAAAA AAGGCAAGAA GCAATAAAAC ATTACATTNG GGGTTCATGC
    NTGGGATACA ANAACCAGCA AGCCCCANGG AAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1373038 [Map]; Strand: w
      • AT1G04860.1 - [+] show detail - ubiquitin-specific protease 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0543-1 - 3-prime edge
    GTTGGGAGAG CCTATGTCAC TAACCCCTTT GTCTGCCCCT CTTTCGGAGC 
    GATTCTTTTC TCATTCTTTC GTCGGACTCT CTGTCTCCTT TTGACGGCGG
    CACCAACGAC AAAGCAAGCA AGCAGTGATA ACATCTATCT ATCTCTCCGT
    CTAAACCAAT TGATTAGGCT AGATCCCAAT TCTTTGAGTA TCGATTCTTC
    TTCAATCCTT TTTATGTGAA TATTCTCCTA AAGCAGCAAC CTCTTGGGTT
    CTTCTTCTTC TGGGTAAAAT TCTCTGGATT CTGCTTTTGC TTTGATACGA
    TTGTTTTGAG CTACTTGTTT TTTTTGGTTC CTGATTGCGT TAAGGGTCAG
    GAGGCTTAGT ANAACTAAGA TATGAAATCT TAATCTGAGT TATTTCGATG
    CATAGACTTT GGATTCTGGA TCTTTGAGTA CTAGTCATTA CAAAGTCGGA
    TAATTTCTCT GTAGGGTACT TCTTANAATA CTGATTTGAT TTGATTTTAT
    GGTTAATTCT CAGTTCGTGA TAATTCTTAA NACTTTTTTA GTGGTATGTC
    TTAAAATCAT GGAATTGAAA TGGGCAGGTN CNATTTTTGA ANGGGGGATA
    TNNGATTTTG AATCCATATA TGCNTNGATG GATGTGGATA ANTNNNTTGG
    NGNNTTTATN TGNGCATGGG GANAGTTCNA AGNTNNTNTG NNGGNAACNC
    CTNNNNNNNT NNNNNAANNA NATTNA

AT1G04860.1

Model type
Protein coding
Short Description
ubiquitin-specific protease 2
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 2 (UBP2); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 1 (TAIR:AT2G32780.1); Has 10400 Blast hits to 6714 proteins in 274 species: Archae - 0; Bacteria - 50; Metazoa - 5279; Fungi - 1927; Plants - 1459; Viruses - 5; Other Eukaryotes - 1680 (source: NCBI BLink).
Link
InterPro Scan - TAIR