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11-0546-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4004139 [Map]; Strand: c
      • AT3G12590.1 - [+] show detail - unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chlorop...
        Distance: -482; Region: promoter
      • AT3G12600.1 - [+] show detail - nudix hydrolase homolog 16
        Distance: -373; Region: promoter
      • AT3G12600.2 - [+] show detail - nudix hydrolase homolog 16
        Distance: -448; Region: promoter
    Flanking Genome Sequence: 11-0546-1 - 5-prime edge 
    TTTACGTTAG CTCAGCTACT ACTCTTACTC TATAGTCTAT GGGCTAACAT 
    GCCATCCGAG CCATTAACTT TCAATCAACC GCTTACACCT TAATTTAACA 
    CCGTTACAGT CGAACAGTAT TTTAGATTCT AGCATAAAAT TCATTAGATA 
    CTGTATGAAT TGACCAATTA TAGTAGCACA TACATGAATT TGTACGGTAG 
    TATAATTCAT GTCTGAATTG TAAGAGCAGA ACATAATATT GTATGAATCA 
    ACCGTTTTCT CTCAAATCCA ATTGTAACAT AGGACAATCC CTACATGTGA 
    TGGACCTATA TAGTACTAAA TGAAGATATG ATGCTGTATC TAGGAAATAA 
    TAGAACAAGG GGGATGAGAT TGCAAAAAAC ATGTCTCCGT GATTTANATT 
    CCACCATGGG ATTCAAAACG AANAAGCT

AT3G12590.1

Model type
Protein coding
Computational Description
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12600.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 16
Computational Description
nudix hydrolase homolog 16 (NUDT16); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 12 (TAIR:AT1G12880.1); Has 1169 Blast hits to 1168 proteins in 345 species: Archae - 0; Bacteria - 470; Metazoa - 236; Fungi - 123; Plants - 235; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12600.2

Model type
Protein coding
Short Description
nudix hydrolase homolog 16
Computational Description
nudix hydrolase homolog 16 (NUDT16); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 12 (TAIR:AT1G12880.1); Has 1172 Blast hits to 1171 proteins in 346 species: Archae - 0; Bacteria - 480; Metazoa - 236; Fungi - 118; Plants - 233; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR