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11-0558-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18036472 [Map]; Strand: w
      • AT4G38590.1 - [+] show detail - beta-galactosidase 14
        Distance: 0; Region: exon2 (CDS)
      • AT4G38590.2 - [+] show detail - beta-galactosidase 14
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0558-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTGTTCAGGC 
    TCATGGACAT TCCAGAAAAC ATAAGTTTGG ATGGTGTTAA GTCCCCCAAT 
    TCTAGCTTTG TCAATGATAC TGGGCCACAT CTGCAACAAA ACCAGAATCC 
    GATCCATGAA GTGAAATCAT CTTTTTGATT GGGTAATAAT AAAAACAGAG 
    TAGACNGTGC NTTACGTCAG GTGTGCNTTC GAGGGTAATG TACAGAACCA 
    GAGAAAAGGA GCTCTCTTTT TCCATTTATG ATCAATGAAG TTCCGTCGTA 
    TGTTACTCCT TTCTTCTTTT TCTCATCATC ATGGCTGCTT GCCTTGGAAC 
    AGAGCGAAAT TACAAGTAGA ATCGCTATCA AGTATCGTGT TCTCGACTTC 
    ATCCTAATTC TACTTGATTG CTCATCGATG AAGACTTTGA TACATAAATG 
    TTACAACTTG TATTATATTG TTCCCTTGTT TTAAGGATGT CCTAGGTTAA 
    AGAGGGAAGC TCGGAACCCT TGTTTCAACT ACTCTCTCTA TTTTAATTTA 
    ATGGTTTTCT TAACTACAAC TTGATCCGCA TTTGAAGCTA CCAACCCGGG 
    CCGNNGACCA CNCGTNNNNN TTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17976383 [Map]; Strand: c
      • AT4G38390.1 - [+] show detail - root hair specific 17
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0558-1 - 5-prime edge 
    GTTGNATANC TCGCGNGCAT AGGGCAACGN NNGACGGNCT AGAGCTACAT 
    AACATGNCGA TCCGACCTTC CNCNNTTTTN CTGTGACACN CATTANTGAT 
    CATGAATGAC CTGNAAAGTN TGTGTAAAAC CTCAATGAAA CAAAAAAGAG 
    TTTACGTACG GGTACACGAA ATGGAGTGGT TGGATTGGGT TCGACGGCCA 
    CTTGATTGTT ATGATGGATC AATGGAGGAG GAGAGAGGGT GGAGAATGAG 
    AAGAGGATGA GGAGGAGACA GCCGGAGACG GCAGATACCA GCGGAAATAG 
    ACGGTGACGG CGGCGAAGGA GAAGGAGTAA CTGGTGGCGA ATT

AT4G38390.1

Model type
Protein coding
Short Description
root hair specific 17
Computational Description
root hair specific 17 (RHS17); CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G20550.1); Has 829 Blast hits to 827 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38590.1

Model type
Protein coding
Short Description
beta-galactosidase 14
Curator Summary
putative beta-galactosidase (BGAL14 gene)
Computational Description
beta-galactosidase 14 (BGAL14); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 23317 Blast hits to 9736 proteins in 810 species: Archae - 62; Bacteria - 1372; Metazoa - 9840; Fungi - 2130; Plants - 1323; Viruses - 462; Other Eukaryotes - 8128 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38590.2

Model type
Protein coding
Short Description
beta-galactosidase 14
Curator Summary
putative beta-galactosidase (BGAL14 gene)
Computational Description
beta-galactosidase 14 (BGAL14); FUNCTIONS IN: sugar binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 3072 Blast hits to 2969 proteins in 587 species: Archae - 15; Bacteria - 892; Metazoa - 685; Fungi - 433; Plants - 695; Viruses - 19; Other Eukaryotes - 333 (source: NCBI BLink).
Link
InterPro Scan - TAIR