1. Home
  2. Mutant Lines
  3. 11-0579-1

11-0579-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1056958 [Map]; Strand: w
      • AT5G03910.1 - [+] show detail - ABC2 homolog 12
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0579-1 - 3-prime edge 
    ATTTCAACCA TCTCCGAGAC CTTTGAACTT CTGTAAACCC TCCGCTCTCC 
    GTCTCCGAGC CAATACAACA GTCAATTCAC TAAAAGCCCT CGAAACTATT 
    AAACCCTATC TTCAATCGGA ATCTAAAACC GTCCTACTTG GCTGGCTCTG 
    CAGCTGTGTC TCTGTTGTCT CGCTTTCTCA GATTGTTCCT AGGCTCGGCT 
    CCTTCACTTC CAACCTTAAC GCAAACGCCG CGAGCTTGAC GAAGCTCAAA 
    GGCGAATGTC TCGTTTTGGC GGGTCTGGTT TTGGCTAAGG TTGTTGCTTA 
    TTATCTGCAG CAAGCGTTTC TTTGGGAAGC TGCTTTGAAT ACTGTTTACA 
    AGATTCGGGT TTTCGCGTAT AGGAGGGTTT TAGAGAGAGA ACTAGAGTTC 
    TTTGAAGGTG GCAATGGGAT TTCATCAGGA GACATTGCTT ACAGGATCAC 
    TGCTGAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1058946 [Map]; Strand: w
      • AT5G03930.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -558; Region: promoter
    Flanking Genome Sequence: 11-0579-1 - 5-prime edge 
    GTTGAAATGG ATGTTTGAGA AAGAGAGATG AGCTCCGGCG GTGAGATAAC 
    GGCGGCGGAG GAANGNGNAG NNACANGTGN CANTGNTCNC CAGGACGANA 
    AGTGTCATTC CNCTAGGAAT ATCATCGTTT TAATCCTAAT NGNATGATAA 
    NTCNTNTTAN CCGNNACNNN ACCGNNAATN TAANCNGANG CTAANANNNG 
    AGGCCTTCTA GACNCNGAAA CCNGANGNNN CCCTTNNCCA GNATNNNAAT 
    ATCNNNACNA TACNNNNNAT GGTTCCCCTG NCCATGCNTA NNGGGGTANC 
    NNNANCCAAN CNTATNTGCA NACCNNTNAT ANNANATACA TACAANNCTA 
    TNGTATTANA NANATANGNT AAGCACNNNA NGTTNAAACC ATGANCACTN 
    ANTTTGGAAG TACNNNNNAN ATNCANGTGA NAAGGAAATA ATANGANNNT 
    NNAANNAGGA CATTATACGA CTCCCNC

AT5G03910.1

Model type
Protein coding
Short Description
ABC2 homolog 12
Curator Summary
member of ATH subfamily
Computational Description
ABC2 homolog 12 (ATH12); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 14 (TAIR:AT1G28010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03930.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03920.1); Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR