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11-0584-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22986420 [Map]; Strand: w
      • AT3G62080.2 - [+] show detail - SNF7 family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G62080.1 - [+] show detail - SNF7 family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0584-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTACTNCNTT CAGATNGNGA CCATNAGGTN GAGGCGATGG 
    NTTNATNNAC GGCNNTTATG TGGCCNTANG TCCTNATTGG NNACTTNAGA 
    TTGAAGAATT ANGCAGNNAT GGGCANNATC ACNGCTNCNT NCNCNATATG 
    GGTTGTTCAT CATTGATCCT GTCCAGGTCT GGTCAATTGC TTTTGGTTCT 
    AGATGAAATT AGTAACTAGT AGGAAGAACT GATTATGTAA CGTTGATTTG 
    TTCACTTGTT TCTAAAAGGT GAAGAAGGCG TGGTTTGATC GAGGAGGAAT 
    GACGCCTTTA TGCATTGATG ATGTTGTGGT GAGTTTCTGC TGCATTTAGT 
    GGCCAAAGAG GATTTATCTT CTTTAAGATC GATTATATAA GTGGCTCGTG 
    TTTCCAGTTA TTGATGCATA GTGAAGGTGA TGTTGTGCGG ATTANTGATC 
    TCGATGATCC CGGTAGTGGT CGTATTGCTC GTTTATTGAG GACAGTGAAN 
    AACTTAATGG TTCAACAGCC ANTGAANCAG GAAGAGATTC TGGAAAGTAC 
    ACTTGTTCTT GTTCCACTCT TGAAGGTGCT TNCTGTTTGT TCTCACTTTT 
    ACCCTCTNTA TCTNGGAGAA NAATTANNAN NCNNGGCCGN NACCACNCTG 
    CCCCNTNTAN NNNNNNGNNN A

AT3G62080.1

Model type
Protein coding
Short Description
SNF7 family protein
Computational Description
SNF7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62080.2

Model type
Protein coding
Short Description
SNF7 family protein
Computational Description
SNF7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); Has 1192 Blast hits to 1169 proteins in 233 species: Archae - 26; Bacteria - 65; Metazoa - 638; Fungi - 121; Plants - 165; Viruses - 1; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR