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11-0593-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23383985 [Map]; Strand: w
      • AT3G63290.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 447; Region: intergenic
      • AT3G63300.1 - [+] show detail - FORKED 1
        Distance: -1003; Region: intergenic
    Flanking Genome Sequence: 11-0593-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAATCCC TAAAAATTAG ACAGATCAAA AGGGAATAAA
    GGATGTATCT TTATTCAGTG GTCACCCACC TATAGTTTCC AAAGTGCAAA
    TAAATTTAAT ATAGATACAC ATGATGAGAT TTTGAAATAT CTTATATATG
    CNGTTTTTAT ATATATCAAA ATGCTCTAGT ACCAAAGAAT ATAGATCAAC
    AATCATGTTA ATTTGTACAA AGATGAAAGA AGATCAGAAG TTTTGATTGT
    GTAGCCTGAA GAAAACCTTG GATGGATGAA TAAACTAATT GCCAAGTTTT
    GTGTCATTGA AGTGGAAAAG AGACAGAGAG AAGAAGGTGA CGTAAGGGAA
    AGCACGCCAA GGCAGCAGCA TGTGTGAATG TACGCAAAGG TCGCAGCTTT
    GTGTTTCAAA ACCGAAGCAG AAGGGACCAA ATTAAGAGAC TGACTGATCA
    TCATACACAG TCGTTTCATT CCTTTATTCT CATCTTTCTC TTCCTCCCAT
    TTTCTCACAC CAAATTTCAG CACCTAATCC GTTAGTTTAA CCATGATCCA
    CAACAATAAA CCANNN
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23383979 [Map]; Strand: w
      • AT3G63290.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 441; Region: intergenic
      • AT3G63300.1 - [+] show detail - FORKED 1
        Distance: -1009; Region: intergenic
    Flanking Genome Sequence: 11-0593-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    GATACCCACA TTTTCCATTC TTTATAACCA ATCCCTTAGA AAAATACTAG
    TCATTTTGTC TCTCTGATTA TTCCTTTGCC TTGCAATCAT TGTTCTTGTT
    TGGACGTTTT GTATTTTATA CTACCAATTA AAAATTGAAT GTATCTGCCA
    CCTTTGAATG ATGAACCCTC TTTTCCATTT TATTGTTTCT TTAAACTACT
    TTTAGTTTTT AGGTACCATC TTCTTTTGCT TTTGATTTGC TTACAATAGA
    CACCTACATA CCTACACCAT ATCCGTTTCT ATTCTTAGAT TAGGGTTTTG
    AAACCAAGGT CACTTTCGAT GCAAAAAGCA CCTCTTTAGG TCAAAGCAAG
    CATCTTCGAA GGGACAAAGT TTGAAACTTT GTTTTGAATT

AT3G63290.2

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G13400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63300.1

Model type
Protein coding
Short Description
FORKED 1
Curator Summary
Encodes a pleckstrin homology domain- and DUF828-containing protein. Mutants have defects in leaf vascular pattering, with vascular bundles that fail to meet distally in both the cotyledons and leaves. Necessary to the formation of the closed leaf vascular pattern characteristic of dicot leaves in response to auxin. Redundant with FKD2. FKD1 may influence PIN1 localization in an auxin dependent manner. proposed to be a key component of the auxin canalization pathway.
Computational Description
FORKED 1 (FKD1); CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 742 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 118; Metazoa - 127; Fungi - 51; Plants - 226; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).
Link
InterPro Scan - TAIR