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11-0607-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19636912 [Map]; Strand: c
      • AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
        Distance: 0; Region: exon21 (3UTR)
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 11-0607-1 - 3-prime edge 
    GAGTNAAGGA NNCCAACCGN ANTGCTCTTT GNGNNNGAAA TCCATNNTTN 
    CAAGNTNAGA CATTACCATG AAGTATCTAT CATTANCAGA ACAAGANTTG 
    AAGGCATATA ATGAAAAAAA GAAACAAACA AAACCTTGTG ATATTGATTA 
    GATCAACTTC TACCCGCAAT TCTCATCAAA GGAGCAATAA CACCCTGAAT 
    CTCTAGAAGA GACTGTTGTA TCCTAATCTC CTGATTAACC TCCCTCTTCA 
    AGTTCCTGAG AAGCCCTTTA AACTCGTTTT TACCCTTGAT GTCTTCAGCT 
    CTCGTCTCCA AAACCTTCTT CGTCAATCCC ATCAACAATC CTGAATACCT 
    CTGCACAGTG CAGTACCTTT GTAAGAAGCC TACCAGCATT CCCAACTCGC 
    CTTCCTCCAT ATTCGACACG CACTTCATCA GCTTNCTCCC TNGCCACTAA 
    TNCTTNCATN ANTGCCACAA CNTNGGNCGG TTTCTTCTCN TNCAACACCG 
    ANGACCAGAG CTTTCTTATG CNTTGAACTT CTTNNAGANC TTATNGGNGT 
    CTCNGANAGN TTNNATCCTT TCTTCTCCGT TGACCGNGGT AGCNTNTTTN 
    GGATGGCTTN TNGGNNTTCC CCTTTNTGGA ANGANCCGGA AATNTNTAGG 
    CNCNGGNGGC CCTTNTNNNT ANTTNATCNC NNTNGCTNAA CNGATTGNAG 
    AGANCTAAAN TNTTTCTANT CNTCTGNAAN ATATATGTNN NNTTTTGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19636802 [Map]; Strand: c
      • AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
        Distance: 0; Region: exon21 (3UTR)
    Flanking Genome Sequence: 11-0607-1 - 5-prime edge 
    TNCNNNGGTA CCGAGCTCAA ATTANCNNNC NAGGNCNNAA AACNNGNCGA 
    GCCGATANAN TGNAGTACCC TGTACNNCAG TGTCCGGTTG GACCAGTNCA 
    CCCTNGAGCA GCTTTCCGTC TGGCAGCCGA TCTAATTGTC TCGATTAGAG 
    GAGCGTCCTC GTCGAGCTTA TCTTCTCTGT CTGACCCGCC ACTAATAGAC 
    TCATCCTCAT CGCTTCCACT TTGCTCATCA AACAGTCTCT TTCGCTCTGT 
    TTCCGGACGT TTTCTTGGCC GTCCCCTGCG TCTTACATTT GCTGCTTCCT 
    TGTCGTCTGT GACAGACGCA TCATCACAAG TCAAGACTTA AAGCATGCAG 
    ACATATCATA CTCATCTACC GGCTTTGATT AAACCAAATC AGATGTTGTG 
    CGAGTGCACA TAACATACCT TGTAAATCCT CGTTTTTCAA GCATTTCTCC 
    TCCAAGGTTT CCAAGAAGGT GAAGCAAGGA CGCCATCCAC TGGGATCTTC 
    GTCTGTATTA ACATGCACTA TACGCCCCTG AACGTCCTTC TTACTGTTCA 
    GCAAGCAAAC AAGAGCATAT ATAAAGTTAT TTATTAGCAG AGAGCTTNCT 
    ACTTGCTCAG AGAGTCATCA GTCTTACATG TCAATGATGT CAGACACTGA 
    GAGTCTGGTT GCAAATGGGA AGGATAGCAA CTTTCCANAA ACAACAGTTG 
    CTTTTGGGGC GTCCCTAAAA G

AT2G47980.1

Model type
Protein coding
Short Description
sister-chromatid cohesion protein 3
Curator Summary
Essential to the monopolar orientation of the kinetochores during meiosis.
Computational Description
sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47990.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Curator Summary
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.
Computational Description
SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink).
Link
InterPro Scan - TAIR