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11-0607-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19636912 [Map]; Strand: c
      • AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
        Distance: 0; Region: exon21 (3UTR)
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 11-0607-1 - 3-prime edge
    GAGTNAAGGA NNCCAACCGN ANTGCTCTTT GNGNNNGAAA TCCATNNTTN 
    CAAGNTNAGA CATTACCATG AAGTATCTAT CATTANCAGA ACAAGANTTG
    AAGGCATATA ATGAAAAAAA GAAACAAACA AAACCTTGTG ATATTGATTA
    GATCAACTTC TACCCGCAAT TCTCATCAAA GGAGCAATAA CACCCTGAAT
    CTCTAGAAGA GACTGTTGTA TCCTAATCTC CTGATTAACC TCCCTCTTCA
    AGTTCCTGAG AAGCCCTTTA AACTCGTTTT TACCCTTGAT GTCTTCAGCT
    CTCGTCTCCA AAACCTTCTT CGTCAATCCC ATCAACAATC CTGAATACCT
    CTGCACAGTG CAGTACCTTT GTAAGAAGCC TACCAGCATT CCCAACTCGC
    CTTCCTCCAT ATTCGACACG CACTTCATCA GCTTNCTCCC TNGCCACTAA
    TNCTTNCATN ANTGCCACAA CNTNGGNCGG TTTCTTCTCN TNCAACACCG
    ANGACCAGAG CTTTCTTATG CNTTGAACTT CTTNNAGANC TTATNGGNGT
    CTCNGANAGN TTNNATCCTT TCTTCTCCGT TGACCGNGGT AGCNTNTTTN
    GGATGGCTTN TNGGNNTTCC CCTTTNTGGA ANGANCCGGA AATNTNTAGG
    CNCNGGNGGC CCTTNTNNNT ANTTNATCNC NNTNGCTNAA CNGATTGNAG
    AGANCTAAAN TNTTTCTANT CNTCTGNAAN ATATATGTNN NNTTTTGG
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19636802 [Map]; Strand: c
      • AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
        Distance: 0; Region: exon21 (3UTR)
    Flanking Genome Sequence: 11-0607-1 - 5-prime edge
    TNCNNNGGTA CCGAGCTCAA ATTANCNNNC NAGGNCNNAA AACNNGNCGA 
    GCCGATANAN TGNAGTACCC TGTACNNCAG TGTCCGGTTG GACCAGTNCA
    CCCTNGAGCA GCTTTCCGTC TGGCAGCCGA TCTAATTGTC TCGATTAGAG
    GAGCGTCCTC GTCGAGCTTA TCTTCTCTGT CTGACCCGCC ACTAATAGAC
    TCATCCTCAT CGCTTCCACT TTGCTCATCA AACAGTCTCT TTCGCTCTGT
    TTCCGGACGT TTTCTTGGCC GTCCCCTGCG TCTTACATTT GCTGCTTCCT
    TGTCGTCTGT GACAGACGCA TCATCACAAG TCAAGACTTA AAGCATGCAG
    ACATATCATA CTCATCTACC GGCTTTGATT AAACCAAATC AGATGTTGTG
    CGAGTGCACA TAACATACCT TGTAAATCCT CGTTTTTCAA GCATTTCTCC
    TCCAAGGTTT CCAAGAAGGT GAAGCAAGGA CGCCATCCAC TGGGATCTTC
    GTCTGTATTA ACATGCACTA TACGCCCCTG AACGTCCTTC TTACTGTTCA
    GCAAGCAAAC AAGAGCATAT ATAAAGTTAT TTATTAGCAG AGAGCTTNCT
    ACTTGCTCAG AGAGTCATCA GTCTTACATG TCAATGATGT CAGACACTGA
    GAGTCTGGTT GCAAATGGGA AGGATAGCAA CTTTCCANAA ACAACAGTTG
    CTTTTGGGGC GTCCCTAAAA G

AT2G47980.1

Model type
Protein coding
Short Description
sister-chromatid cohesion protein 3
Curator Summary
Essential to the monopolar orientation of the kinetochores during meiosis.
Computational Description
sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47990.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Curator Summary
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.
Computational Description
SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink).
Link
InterPro Scan - TAIR