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11-0610-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1681505 [Map]; Strand: c
      • AT3G05690.1 - [+] show detail - nuclear factor Y, subunit A2
        Distance: -2573; Region: intergenic
      • AT3G05700.1 - [+] show detail - Drought-responsive family protein
        Distance: 583; Region: intergenic
    Flanking Genome Sequence: 11-0610-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTTCATAGA TAAGTCAGNG AGTGTGATAA GCNGTACTCT 
    AAACACGTAA ATGAGTTATT GAAGTTATCT AAATGCAGCC TTTTTTTGAA 
    AGAAAAATAA AACTGTATAG TTCTTTCTTC TCAGCGGTTG TAATTTTTCG 
    ACCAAACTTG ACACACTTGA TGATTATGCT TTTTTGTGTG TTAAAAGAAA 
    TTTTATGTTT GCCAACGATC CAATCGAACA TTGAGGAAAG GAAGTGACAT 
    AGCTAAAAGC AAATGTTCTT TAATTCCTTT ACTGTCGTAA GCAAAGGTTC 
    TTTAATTCCT TTAATACCAT AAACGTACAC ACTCGACTTC CACTTGAGTG 
    TCCTTAGTTC ATGTATTCAA GTGGAATGCA TATGTAGCTC TACTTCATTT 
    TAATACTTTG TTATTTCGTG CATATTCAAA AGTTGGGTTG TCAATTTTCT 
    TAAGAACATA GAAAAATATA GTTGGTGATT AGTCAGTAAT CGTGTTTTTT 
    GGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1681557 [Map]; Strand: c
      • AT3G05690.1 - [+] show detail - nuclear factor Y, subunit A2
        Distance: -2625; Region: intergenic
      • AT3G05700.1 - [+] show detail - Drought-responsive family protein
        Distance: 531; Region: intergenic
    Flanking Genome Sequence: 11-0610-1 - 3-prime edge 
    TATCTATCAT ACTCGTTTCT TTAGGTTATT CAGATCTTAG CCTAAAGCCC 
    AATACAATCT ACATCTTACT TTGTACATTG CAAAACTTGA TAATTCGATT 
    TTAGTTGGAT C

AT3G05690.1

Model type
Protein coding
Short Description
nuclear factor Y, subunit A2
Curator Summary
Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.
Computational Description
"nuclear factor Y, subunit A2" (NF-YA2); CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A10 (TAIR:AT5G06510.2); Has 655 Blast hits to 655 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 132; Plants - 359; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05700.1

Model type
Protein coding
Short Description
Drought-responsive family protein
Computational Description
Drought-responsive family protein; CONTAINS InterPro DOMAIN/s: Drought induced 19/ RING finger protein 114 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT5G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR