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11-0624-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1137028 [Map]; Strand: c
      • AT1G04250.1 - [+] show detail - AUX/IAA transcriptional regulator family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0624-1 - 5-prime edge
    ATCGTAGCTT TTATACATCC TCAAATCGAT TTTCCTCAAG TACGGTGCTC 
    CGTCCATTGA TACCTTCACG AACGCCGCCG CCTCCGGGCC ACCGCTTGAT
    TTTTGGCAGG AAACCATCAC GTTCTTCCGG TATGATCTCA CCGGTGGCCA
    TCCCACAACT TGTGCCCTAT ATTTTTTTTA AAACGGAAAA ACGGTTATGT
    TATACAAGAT ATAGACTGTA GTTAGCTTTG ACGTGATGTC ACATAAATTT
    TACTTGCATG AGACTATGGG TTAAACATAA TTAAATATAT TAAGACATTG
    GACGATTTAA GAAGAGAAAA AAACCGTAGA CATATGATAA AATGGTTTTG
    GCGAANAAAA ATATATATCT TTAATGAAAT TTCTGTTTTT TTTTGCAGTC
    ACCTTTACAA AAATGTTAAT NTTAANAGCA GTANANAANA GNGGAAAATA
    AATCNTAAAG GACAAAATAG TAAAATTACT TGGCCGGAGG TTTGGCTGGA
    TNTTTAGGAC AAGCNCTCTT NTCCTTGGAA TCAAAAGTCA CGACGTCATG
    AGTCGAAAAT CCTTCCTTGT TTGCAGGCTC ATTATTCAAA TTANCTTNAN
    ATCAACCGTN TTTGAAAACC CTNTTTTGTT TCCGGTTACC GGAGCCANTG
    TTTNTCCACC GGGAANACCA AAACACAGCT NANNCTCCCT NAAATTCAGN
    TTGACNCTGC CCT

AT1G04250.1

Model type
Protein coding
Short Description
AUX/IAA transcriptional regulator family protein
Curator Summary
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.
Computational Description
AUXIN RESISTANT 3 (AXR3); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1763 Blast hits to 1762 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1762; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR