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Mutant Lines
11-0638-1

11-0638-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 1239101 [Map]; Strand: w
  - AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
    Distance: 40; Region: intergenic
  - AT1G04550.1 - [+] show detail - AUX/IAA transcriptional regulator family protein
    Distance: -1274; Region: intergenic
Flanking Genome Sequence: 11-0638-1 - 5-prime edge
```
CATATTCCGC TGACGATCTG AGCTTTGTGT GATCTTTATT TTATTGGTCT 
TATATTAACT TTTATTTTTT TTGGAAAACT ATATTTTTTA AGGATC
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 1238985 [Map]; Strand: w
- AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: 0; Region: exon1 (CDS)

GGAATATGTG CGTTGCACAC GTCCGGCTCC ACCTTTCTTA GTAGATCCTT 
CTGAGACCAT CGGCCCACCA CCACCACCGC ATACGAAACT GCATTCCACA 
CCACAAATCT TACTAAAACA CGAGAAAAGT CCATTACCTC CATCTGTGTG 
ACGGCGGTTA TGCTTTTTCG TCGTCGGAGT TTTCCGTCTT GAACTCATTC 
CTCCCCCGGC AGTTGCAGCT GGAACGCTCG CGCCATCGTA ATCAGTGCTA 
CTTATATGGC TTGATCCTAT GTCGTACAAC GGTGGAAGCT CTGTTCGCCA 
TCTCTCGAGT TTTGATCGCA ATCCTTCGAT GCTAGATTCA TCGATGCTCC 
ATTCGCTGAG TATTGAACTT TCCGTTTCGT GCGATCTATC TTTCGCCAAT 
TTGTCAGCCA CTTCAGATGG CGATGGTCCT AACTCCGATT CAGTTAAGAT 
TCGTCTTCCA GCTAAATTCC TCACTGGTGT ACCAAAATCG TGATGAGTTC 
TCATCGGTGT AGCCATGTAG TTTGATCGGA TCGGGGTTGA TCCGACGATG 
TTTGATCTCA TTGGAGTCGA ACCAACCATG TTAGACCGCA TAGGAGTTCG 
CATTGGAGTC GATCCAACCA TGTTGGGATG CATCGGTGAC ATTGCGATGA 
TGTTGGATCT CATANGAGTT GATCCAACTC CGTTAGATCT CATCGGAGTA 
NATGCCATGA TGTTTGT

AT1G04540.1

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04550.1

Model type: Protein coding
Short Description: AUX/IAA transcriptional regulator family protein
Curator Summary: IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem
Computational Description: indole-3-acetic acid inducible 12 (IAA12); FUNCTIONS IN: transcription repressor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.3); Has 1087 Blast hits to 1087 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1087; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR