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11-0650-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 306092 [Map]; Strand: w
      • AT1G01860.1 - [+] show detail - Ribosomal RNA adenine dimethylase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G01870.1 - [+] show detail - pre-tRNA
        Distance: -292; Region: promoter
    Flanking Genome Sequence: 11-0650-1 - 5-prime edge 
    TCTACGAGTG GATTGTGAGA GAACCTGGCC GAGGGACTTT CTGGGAAACC 
    GACCACGAGA ATTGAGTGAT TTGAGGGTTG AGTGGTAATC ATCTGGGCTG 
    CTCTTGCCGC ATGACACCTT CACGGTCCTC CGTCGTGATA ACGCGGCAGA 
    TATTTCCCCC AACAGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 305976 [Map]; Strand: w
      • AT1G01860.1 - [+] show detail - Ribosomal RNA adenine dimethylase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G01870.1 - [+] show detail - pre-tRNA
        Distance: -408; Region: promoter
    Flanking Genome Sequence: 11-0650-1 - 3-prime edge 
    CTCGTAGACC ACATAGCTTA AAATCCTCAG CTTTGTTTGA GACAAATGGT 
    CGAACACCCA TTAAGTAGAG AATGGTTTGA ATTGTCTGTC ACAGCATTAC 
    ATGTTGAATT

AT1G01860.1

Model type
Protein coding
Short Description
Ribosomal RNA adenine dimethylase family protein
Curator Summary
dimethyladenosine transferase
Computational Description
PALEFACE 1 (PFC1); FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity; INVOLVED IN: response to cold; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228; Bacteria - 6144; Metazoa - 264; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 2738 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01870.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Val (anticodon: TAC)
Link
InterPro Scan - TAIR